PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10014229m
Common NameEUTSA_v10014229mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family B3
Protein Properties Length: 299aa    MW: 34031.6 Da    PI: 4.2657
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10014229mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.95.1e-1516102899
                      -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                       d + s+rlv+p ++   + ++++ ++t +l+ ++g+ W+vk   + ++++ + +++GW++Fv +ng   gD+++F++dg  +++++v+++r+
  Thhalv10014229m  16 QDLSLSQRLVIPSDYR-MY-YPNPLPQTAVLRKPEGNFWNVKW--TISQEGtISFEDGWSKFVTDNGPIHGDILLFSYDG--CRNFFVRIYRN 102
                      45556799*****996.55.3345899****************..555444499***********************987..66669999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.65E-195102IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.9E-177101IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.5E-119103IPR003340B3 DNA binding domain
PROSITE profilePS5086313.4799103IPR003340B3 DNA binding domain
PfamPF023624.3E-1316102IPR003340B3 DNA binding domain
CDDcd100176.13E-1417101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MVFSPYPDFG FTFNSQDLSL SQRLVIPSDY RMYYPNPLPQ TAVLRKPEGN FWNVKWTISQ  60
EGTISFEDGW SKFVTDNGPI HGDILLFSYD GCRNFFVRIY RNGLVVETKS PIKIQEISDD  120
DDERNSSDDD DDDHDMENEE DSNDENKIIS LSLGSSDEDD DDDDDDDTTL AEVNKSNGSS  180
KKGGTSQKKR AESIGDPAMY LDDPTNPCFI PISSYRRMMV IAQQVIKDHD LKFGETINLI  240
DGFGQVEGKV VEWKDRIVVY SWDEVCKRNH AKLEDVIICE ILHERGLVQS IKAHFVKK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10014229m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401176.10.0B3 domain-containing protein At5g57720
SwissprotQ9FHH11e-107Y5772_ARATH; B3 domain-containing protein At5g57720
TrEMBLV4LFY90.0V4LFY9_EUTSA; Uncharacterized protein
STRINGXP_006401176.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137971723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57720.14e-88B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]