PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10013898m
Common NameEUTSA_v10013898mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ERF
Protein Properties Length: 365aa    MW: 41377.6 Da    PI: 4.3856
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10013898mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-19128177255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +++GVr+++ +g+W+AeIrdp +   r+r++lg+f taeeAa  +++a+ +l+g
  Thhalv10013898m 128 KFRGVRQRP-WGKWAAEIRDPEQ---RRRIWLGTFETAEEAAVVYDNAAIRLRG 177
                      89*******.**********743...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.4E-30127185IPR001471AP2/ERF domain
CDDcd000181.12E-33128184No hitNo description
SuperFamilySSF541711.5E-21128186IPR016177DNA-binding domain
PROSITE profilePS5103223.775128185IPR001471AP2/ERF domain
SMARTSM003802.7E-39128191IPR001471AP2/ERF domain
PfamPF008475.0E-12128177IPR001471AP2/ERF domain
PRINTSPR003672.7E-10129140IPR001471AP2/ERF domain
PRINTSPR003672.7E-10151167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MDEYMDFRPL KYTEHKTSVT KYTKPSPAKN LSGETRPDSV RTVRVCVTDP DATDSSSDEE  60
EDFLFPRRRV RRFINEIRVE PACNNNINIT GGVSMKERKR LSDETQSPAT YRHRPLKVSV  120
PYGQNGRKFR GVRQRPWGKW AAEIRDPEQR RRIWLGTFET AEEAAVVYDN AAIRLRGPDA  180
LTNFSIPPQS QEEEEEEPVI DKPESNITTT TTTTSSSEST EDFHHLSSPT SVLNLRSSEE  240
MQQIQQPFKS AKPEREISDA PWWHTGFGTG SGESDDSFPL DTPFLDNYFN ESPPEISLFD  300
QPMAQVFSEN DDIIFNDMFL DGQSMFLDGQ SMSIGDEFCS SSIKDIGSMF SDFDDSLVSD  360
LLVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-22126192370ATERF1
3gcc_A2e-22126192370ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10013898m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401723.10.0ethylene-responsive transcription factor CRF3
SwissprotQ9FK121e-159CRF3_ARATH; Ethylene-responsive transcription factor CRF3
TrEMBLV4NBA30.0V4NBA3_EUTSA; Uncharacterized protein
STRINGXP_006401723.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22292576
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53290.11e-138cytokinin response factor 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]
  3. Jeon J,Cho C,Lee MR,Van Binh N,Kim J
    CYTOKININ RESPONSE FACTOR2 (CRF2) and CRF3 Regulate Lateral Root Development in Response to Cold Stress in Arabidopsis.
    Plant Cell, 2016. 28(8): p. 1828-43
    [PMID:27432872]