PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10013882m
Common NameEUTSA_v10013882mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 368aa    MW: 42055.6 Da    PI: 8.1445
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10013882mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.21.7e-07210232123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C++Cgk F+r  nL+ H+r H
  Thhalv10013882m 210 HYCQICGKGFKRDANLRMHMRAH 232
                      68*******************99 PP
2zf-C2H212.40.00046331346621
                      TTEEESSHHHHHHHHH CS
          zf-C2H2   6 CgksFsrksnLkrHir 21 
                      Cg++Fsrk+ L++H +
  Thhalv10013882m 331 CGTRFSRKDKLMSHVS 346
                      **************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.71E-6208235No hitNo description
PROSITE profilePS5015712.632210237IPR007087Zinc finger, C2H2
SMARTSM003550.0028210232IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.8E-6210234IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280212232IPR007087Zinc finger, C2H2
SMARTSM00355160261294IPR015880Zinc finger, C2H2-like
SMARTSM0035573299321IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MNQEEHIMNK GEGSMPCFSE TTNTSSQPIY TNTVTAGTKS PENDDVSLSL LYNLSTIQET  60
VHQIQSLVSF FMISNTSGST SSLAVANIES LVQEIITDAS SILFTCRQLQ ISSSNNNDIK  120
NDQIADAMVM EFPPQEIDPD RDFMRESLTN LLAVQEREPN SFLDQTTHKL DWYGTQTIDP  180
KTEHRRSKTR SGNYDILELD AANLLAKYTH YCQICGKGFK RDANLRMHMR AHGDEYKTRE  240
ALISPTRHDK KVEYSLKKHY YSCPQQGCRW NQRHEKFQPL KSVICAKNHY KRSHCPKMYM  300
CRRCSVKHFS VLSDLRTHEK HCGDIKWICS CGTRFSRKDK LMSHVSLFLG HSPAHVPSQL  360
HPPMITP*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10013882m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006400798.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 2
SwissprotQ0WT240.0STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLV4N9240.0V4N924_EUTSA; Uncharacterized protein
STRINGXP_006400798.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57522547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.10.0C2H2 family protein