PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10013872m
Common NameEUTSA_v10013872mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family WRKY
Protein Properties Length: 370aa    MW: 41038.9 Da    PI: 4.4206
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10013872mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.73.7e-31179237259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers+ dp+++++tY+geH+h+
  Thhalv10013872m 179 SDMWAWRKYGQKPIKGSPYPRNYYRCSSSkGCLARKQVERSNLDPNIFIVTYTGEHTHP 237
                      79*************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.4E-31165239IPR003657WRKY domain
SuperFamilySSF1182904.71E-27171239IPR003657WRKY domain
PROSITE profilePS5081133.281173239IPR003657WRKY domain
SMARTSM007746.1E-39178238IPR003657WRKY domain
PfamPF031063.2E-26180237IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007263Biological Processnitric oxide mediated signal transduction
GO:0009739Biological Processresponse to gibberellin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MSEDWDLFAV VRSCSNSSSV SSATTNTNDR GNCKQLDPPL PPPPPPPPLF THIGEERDID  60
SCNELQDSCK PFLPVTTTTT TWSSSPLPLP PPLVSSAPPN ILMKQEQGQL ESVQDQKPPL  120
GVRSSFPPST TISSSSVFVF RGQRDQLLQQ QSQTPLRSRK RKNQQKRTIC HVTQENLSSD  180
MWAWRKYGQK PIKGSPYPRN YYRCSSSKGC LARKQVERSN LDPNIFIVTY TGEHTHPRPT  240
HRNSLAGSTR NKSQPVNPIP KPDHSSGQTV SGSNTVKEEV HLSPTTPLKE NDDVQGTNGD  300
EEVNMEDEEL DEVEEEEEEE EEEEEEDEDE DCDVDDVLIP NFAVRDRDDL FFAGSFPSWS  360
AGTAGDGGG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B6e-201802401880Disease resistance protein RRS1
5w3x_D6e-201802401880Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00561DAPTransfer from AT5G52830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10013872m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401776.10.0probable WRKY transcription factor 27
SwissprotQ9FLX81e-134WRK27_ARATH; Probable WRKY transcription factor 27
TrEMBLV4LHL60.0V4LHL6_EUTSA; Uncharacterized protein
STRINGXP_006401776.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99982636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.11e-111WRKY DNA-binding protein 27
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Mukhtar MS,Liu X,Somssich IE
    Elucidating the role of WRKY27 in male sterility in Arabidopsis.
    Plant Signal Behav, 2017. 12(9): p. e1363945
    [PMID:28816593]