PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10013542m
Common NameEUTSA_v10013531mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB_related
Protein Properties Length: 447aa    MW: 50962.1 Da    PI: 5.1521
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10013542mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.11.8e-12397444247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      + WT+eE++ l ++vk++G+  Wk I +  +     Rt+ ++k++w+++
  Thhalv10013542m 397 KFWTPEEEKALREGVKEYGKS-WKDIKNANPavlGERTEVDLKDKWRNL 444
                      67*****************88.***********999***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.157391446IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-13393446IPR009057Homeodomain-like
SuperFamilySSF466891.65E-13393445IPR009057Homeodomain-like
SMARTSM007175.0E-6395446IPR001005SANT/Myb domain
CDDcd116602.62E-16397446No hitNo description
PfamPF002496.1E-10399444IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MEVIDQWVAE FFIRRQHNTR VSPINLLSAL KFGDSSDCLK LKISSVLRDI SNSLNRGMLD  60
EGTLDLLEIL EKLLLQQRSL IMESHKSAYC WTAAECTLRF MWPLSASDGL FTDALEKIWT  120
KRIGILKESG SDLVTHDLLK WETDLKKALE DPELYQRIRE TNIRYTAISF LTQLLKEQWA  180
LLGNSSLESV AQRRFLKRKA DNNVEGDCVD NRSDPNAVDE STRRLENDTI DNVNERRGTG  240
EGEDGNGNNR DIEGAGCLEN DEIDKVNEQH AADEEQTMSA QEQEHEPSLD KGDKMAAREL  300
KDYLLEIQRH IDPSTRQDQE PNNAINRSVD VTPQPARVNR SGTGVQDHNE QQDNVIARGS  360
GIQETWSGRI RPRLPTPVPL NVSPLKNVNS PVRRRKKFWT PEEEKALREG VKEYGKSWKD  420
IKNANPAVLG ERTEVDLKDK WRNLVR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1192198RRFLKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10013542m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401096.20.0uncharacterized protein LOC18018067 isoform X3
TrEMBLV4LFS10.0V4LFS1_EUTSA; Uncharacterized protein
STRINGXP_006401097.10.0(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.20.0MYB_related family protein