PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10013525m
Common NameEUTSA_v10013525mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family Nin-like
Protein Properties Length: 451aa    MW: 50184.8 Da    PI: 5.2223
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10013525mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK75.66.1e-24354404252
           RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                      +k+++l+d+s++F+ pi++A+++L +c+TvLK+iCR+ G++RWPhR++ksl
  Thhalv10013525m 354 TKKMTLKDVSMHFHIPIEQASRKLSLCPTVLKKICRRGGLNRWPHRRVKSL 404
                      799**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.154337424IPR003035RWP-RK domain
PfamPF020423.8E-20356404IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MADNNHKDAE DQYYDHYLDE DLLNVINSPD RNLMDLSFNE DPLPHLPPLF PLPPPPPTPT  60
TEDINETELF QELSISISNS GDTSDMLVSQ LANEGSLTWE MIDDVNGSIN NDVLGQIVDD  120
NATNVCETSQ LEVGTLVFGE RGTNFESGGP STMPVPAVSR IEPGSLVLGE FGPNFETGGT  180
SATPVPASRP TVSEGILVCT CCSPLRVLVH SNGEETMRLD IHGGIGYFCH AIFETQRVDG  240
SNQRQHHTYH LIDMSMEDVK KFLEDYCAEI EAGGFVMTQD TNEDMFQAMN ACYRNNQLFL  300
SSSGINDLPM SLVMPDKSLG DPSIPGYVSL RDDPPVKKGK PRRQTRLAAQ RERTKKMTLK  360
DVSMHFHIPI EQASRKLSLC PTVLKKICRR GGLNRWPHRR VKSLLSKINS LKEVLRTATD  420
PRVRMRAEQE LARLEKRLSK ICGGILRNYK *
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10013525m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006400142.10.0uncharacterized protein LOC18017367
TrEMBLV4KUH10.0V4KUH1_EUTSA; Uncharacterized protein
STRINGXP_006400142.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40762342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66990.18e-13RWP-RK domain-containing protein