PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10013115m
Common NameEUTSA_v10013115mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family WRKY
Protein Properties Length: 570aa    MW: 62731.6 Da    PI: 7.4574
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10013115mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.71.8e-31208265260
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                      dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ d+ ++ei+Y+g+H+h+k
  Thhalv10013115m 208 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGLITEIVYKGTHDHPK 265
                      8****************************************.***************85 PP
2WRKY106.31.6e-33376434159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+v+g+++prsYY+Ct +gCpv+k+ver+++dpk+v++tYeg+Hnh+
  Thhalv10013115m 376 LDDGYRWRKYGQKVVRGNPNPRSYYKCTATGCPVRKHVERASHDPKAVITTYEGKHNHD 434
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.319202266IPR003657WRKY domain
SuperFamilySSF1182907.98E-25205266IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-26206266IPR003657WRKY domain
SMARTSM007742.4E-34207265IPR003657WRKY domain
PfamPF031062.6E-24208264IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-37361436IPR003657WRKY domain
SuperFamilySSF1182902.35E-29368436IPR003657WRKY domain
PROSITE profilePS5081138.664371436IPR003657WRKY domain
SMARTSM007748.6E-39376435IPR003657WRKY domain
PfamPF031065.3E-26377434IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MDPDISNRKE SRVDSSASGH PDSRRDSSDC GGGGGGGARY KLMSPAKLPI TRSTCITVPP  60
GLSPTSFLES PVLLSNIKAE PSPTTGSLFK PHAVHANSSS YTARTIHQNI LDDQKSSEFE  120
FRPPASNMFY AELDKHRGEA PLQFRSQCHS FKHSPSSATE AAASSSEITR QTVPHRTTPS  180
GSERSDPDES IQAPQHESRG SAPSILADDG YNWRKYGQKH VKGSEFPRSY YKCTHPNCEV  240
KKLFERSHDG LITEIVYKGT HDHPKPQPSR RNSGGLVMPV QEERLDKYSS LNGRDEKGSS  300
LYNLSPPVDQ NGNPDVSPVS ANDDGGDVAR NNDEVDDNDP FSKRRRLDGA MEITSLVKPI  360
REPRVVVQTL SEVDILDDGY RWRKYGQKVV RGNPNPRSYY KCTATGCPVR KHVERASHDP  420
KAVITTYEGK HNHDVPTARS NNNNNNNHDM TAPRFRTEES TDTISLDLGV GIASGGPDHT  480
SNEHSSHQQQ QQQQHHIRSE FVQQTQTNGS GGFRFVHGPP MGPYYANSLN AGMNHQYNGS  540
RETANEAQTG DISSSYPYPH NIGRIQSGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-36206436877Probable WRKY transcription factor 4
2lex_A2e-36206436877Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1342346KRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10013115m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931361e-159KM593136.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY20) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401438.10.0probable WRKY transcription factor 20
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLV4NAL90.0V4NAL9_EUTSA; Uncharacterized protein
STRINGXP_006401438.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31332867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein