PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10012829m
Common NameEUTSA_v10012829mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family WRKY
Protein Properties Length: 700aa    MW: 75871.7 Da    PI: 6.2421
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10012829mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.31.2e-31280337260
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                      +DgynWrKYGqK vkgse+prsYY+Ct ++C+vkkkvers+ +++++ei+Y+g Hnh+k
  Thhalv10012829m 280 EDGYNWRKYGQKLVKGSEYPRSYYKCTNPNCQVKKKVERSR-EGHITEIIYKGAHNHSK 337
                      8****************************************.***************85 PP
2WRKY103.89.4e-33497555159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct +gC+v+k+ver+++d k v++tYeg+Hnh+
  Thhalv10012829m 497 LDDGYRWRKYGQKVVKGNPNPRSYYKCTAPGCTVRKHVERASHDLKSVITTYEGKHNHD 555
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.8E-28273338IPR003657WRKY domain
SuperFamilySSF1182903.79E-25277338IPR003657WRKY domain
SMARTSM007741.6E-34279337IPR003657WRKY domain
PfamPF031066.0E-24280335IPR003657WRKY domain
PROSITE profilePS5081123.25280338IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-36482557IPR003657WRKY domain
SuperFamilySSF1182901.7E-28489557IPR003657WRKY domain
PROSITE profilePS5081138.136492557IPR003657WRKY domain
SMARTSM007741.8E-37497556IPR003657WRKY domain
PfamPF031069.1E-25498555IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MAGFDENVAV MGEWVPRSPS PGTLFSSAIG QEKSSKRVLE RELSLNHGQV TGLEEDTTGN  60
NNNKDSSQTN VLRGGLSERI AARAGFNAPR LNTENIRTNT DFSIDSSLRS PCLTISSPGL  120
SPATLLESPV FLSNPLAQPS PTTGKFPFLP GVNSNSFSSA AASDKAKDEF FDDIGASFTF  180
HPISRSSSSF FQGTTEMMPV DYGNYNNESS HHSPEEDVKP VSQNMESSNL YGIETEQSGQ  240
KRKKSDATTN TGLETVDHQE EAEGEEQRRG DSMVGGAPAE DGYNWRKYGQ KLVKGSEYPR  300
SYYKCTNPNC QVKKKVERSR EGHITEIIYK GAHNHSKPPP NRRSGVQVDG TEQAEQQQQQ  360
QQQQQRDNTA MWVNCNNTNQ QGGSNENNME ERSEYGNQSG SIQAQTGGQY ESGDAAVVVV  420
DASSTFSNDE DEDDRGTHGS VSLGYDGGGG VGGGGEGDES ESKRRKLEAY AAEMSGATRA  480
IREPRVVVQT TSDVDILDDG YRWRKYGQKV VKGNPNPRSY YKCTAPGCTV RKHVERASHD  540
LKSVITTYEG KHNHDVPAAR NSSHGGGSGG GNGNSGVSAA QTHQHYHNGH HSEPPRGRFD  600
RQLTATNQSP YGRPFSFQPH LGPPSGFSFG LGQTGLANLS MPGLAFGQGK LPVLPHPYLT  660
QPVGMSEAMM QRGMEPKVEP VSETGQSVYN QIMSRLPQI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-37280558878Probable WRKY transcription factor 4
2lex_A4e-37280558878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10012829m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401355.10.0probable WRKY transcription factor 2
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLV4LSF00.0V4LSF0_EUTSA; Uncharacterized protein
STRINGXP_006401355.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79542740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.10.0WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]