PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10012562m
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 995aa    MW: 111301 Da    PI: 8.7512
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10012562mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.21.7e-095999954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                      r RR+ri ++f  L++++P       +K++ +++L +A+ YIk L
  Thhalv10012562m 59 ARERRHRISDRFKILQSMVPGG-----TKMDTVSMLDEAISYIKFL 99
                     699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.8215099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-1355108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.51E-1156103No hitNo description
SMARTSM003532.4E-1356105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-1156103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-76099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.40.50.3008.2E-5261282IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF525402.34E-15265404IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF136715.6E-13268376No hitNo description
Gene3DG3DSA:3.40.50.3001.9E-19283400IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.220.102.0E-4494529No hitNo description
SuperFamilySSF529491.67E-17545683No hitNo description
PROSITE profilePS5115412.003550729IPR002589Macro domain
SMARTSM005062.0E-4562732IPR002589Macro domain
Gene3DG3DSA:3.40.220.109.5E-16562669No hitNo description
PfamPF016615.5E-7585668IPR002589Macro domain
Gene3DG3DSA:3.40.50.3008.2E-5670687IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF541971.11E-31737837IPR011146HIT-like domain
PfamPF119693.1E-13762847No hitNo description
Gene3DG3DSA:3.30.428.102.8E-5770854IPR011146HIT-like domain
PfamPF119695.2E-6869915No hitNo description
SuperFamilySSF541971.11E-31882958IPR011146HIT-like domain
PfamPF162787.8E-10920974IPR032566Aprataxin, C2HE/C2H2/C2HC zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006790Biological Processsulfur compound metabolic process
GO:0009150Biological Processpurine ribonucleotide metabolic process
GO:0046983Molecular Functionprotein dimerization activity
GO:0047627Molecular Functionadenylylsulfatase activity
Sequence ? help Back to Top
Protein Sequence    Length: 995 aa     Download sequence    Send to blast
MDPFSFRSQN TKSSSSTTSS SSSSFHGHKD KITGNTNQST SRTSRSTSTL STDPQSVAAR  60
ERRHRISDRF KILQSMVPGG TKMDTVSMLD EAISYIKFLK AQIWFHHNML LFFNDHETTS  120
SCTYSPASVR ELKPAHFGCD DDYGHVMETY SQGMPLTVTD SEYSMWFGSV DQDEQEETMH  180
RHATDSKHRR ATRHALRGST GIRKTAKQRD EFSDQINDKR WKCKPKTPVI QRSSSFNYSF  240
NFFDVLAFSA EFTALIAETE TEKAKQIVVL LIGPPGSGKS TFCDTVMRSS HRPWSRICQD  300
IINNGKAGTK AQCLKIATDS LKEGKSVFID RCNLDREQRS EFIKLGGPEV EVHAVVLELP  360
AQVCISRSVK RTGHEGNLQG GRAAAVVNKM LQSKELPKVN QGFSRIMFCY NDTDVENAVN  420
TYSMLGPMDT LPSGCFGQRN SDTKSQPGIM KFFKKVNALP GSSYNEASDT TRKTNETTEN  480
VRVSPAKLGS SDIVPILAFP SISTADFQFD LENASDIIVE TVEEFLPKLG SARLVLVDLS  540
HGSKILSLVK AKAIRKNIDS GRFFTFVGDI TKLHSEGGLH YNVIANAANW RLKPGGGGVN  600
AAIFKAAGPD LEAATRARAS TLLPGKAVVV PLPSTCPLQN AEGITHVIHV LGPNMNPNRP  660
NYLNNDYTKG CKTLREAYTS LFEGFLSIVQ EQSKLPKRSN QATMSDSGEN IKEDSERNKK  720
YKGPQDKATA NNLESGSVDD TRDSGKKMSK GWSSWALALH SIAMHPEKHE NVVLEFSEDI  780
VVINDQYPKA RKHLLVLARQ ESLDGLEDVC RENLQLLEEM HNAGLKWVKR FQDEDASLIF  840
RLGYHSVLKS PLLHSDLHFV FLVLKVSRAE ELITKIIEID LSFLFFFFQV PSMRQLHLHV  900
ISQDFESDNL KNKKHWNSFT SSFFRDSVDV LEEVRSQGKA RVESEEVLKG ELRCNRCRSA  960
HPNIPKLKSH IRTCPSQYPH HLLQNNRLLA RPET*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lw0_A6e-9149769038231Basic helix-loop-helix, putative, expressed
5lw0_B6e-9149769038231Basic helix-loop-helix, putative, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10012562m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024011424.10.0LOW QUALITY PROTEIN: transcription factor bHLH140
SwissprotQ9M0410.0BH140_ARATH; Transcription factor bHLH140
TrEMBLD7M7380.0D7M738_ARALL; Basic helix-loop-helix family protein
STRINGAT5G01310.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM948599
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.10.0APRATAXIN-like
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]