PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10012073m | ||||||||
Common Name | EUTSA_v10012073mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | HSF | ||||||||
Protein Properties | Length: 178aa MW: 20091.6 Da PI: 10.5064 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 55 | 2.3e-17 | 13 | 103 | 3 | 100 |
HHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 3 lkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 l ++y++++d++++++isws++++ fv+ ++e++ ++ + k F s+f+ F+ L+ Yg++k+k++++ eF +++F +g+ l+++ Thhalv10012073m 13 LDRIYKLVDDPSTDSIISWSKSNKGFVIRNQEKLIRRKIYKRFFCSSFKTFISRLKHYGYSKIKSSDGL-------REFGNENFVRGQPMLMKE 99 6789******************************99999999999**********************87.......9*************9999 PP XXXX CS HSF_DNA-bind 97 ikrk 100 ++ k Thhalv10012073m 100 MHIK 103 8766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 1.1E-24 | 8 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.6E-7 | 12 | 35 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 4.3E-20 | 13 | 98 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 2.2E-16 | 14 | 101 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.09E-19 | 15 | 100 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 5.6E-7 | 63 | 75 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MKDRPDFPVP VILDRIYKLV DDPSTDSIIS WSKSNKGFVI RNQEKLIRRK IYKRFFCSSF 60 KTFISRLKHY GYSKIKSSDG LREFGNENFV RGQPMLMKEM HIKTVMKRLV RSPLSNARIE 120 CPCPSVNPNT TPSIPLTTAI VVFNTCSTGI ICISDVTSPL ASFLTAPAVR EITILSK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10012073m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002886167.1 | 5e-50 | heat stress transcription factor A-4a | ||||
TrEMBL | V4KLB3 | 1e-126 | V4KLB3_EUTSA; Uncharacterized protein | ||||
STRING | XP_006393441.1 | 1e-127 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5067 | 14 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G19630.1 | 3e-30 | HSF family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10012073m |
Entrez Gene | 18011378 |