PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10012016m | ||||||||
Common Name | EUTSA_v10012016mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | ERF | ||||||||
Protein Properties | Length: 349aa MW: 39114.5 Da PI: 4.4853 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.4 | 2.7e-16 | 84 | 133 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 sg+kGVr+++ +g+++AeIrd + + kr +lg+f t eeAa+a+ + + ++e Thhalv10012016m 84 SGFKGVRRRP-WGKFAAEIRDpF-----QkKRKWLGTFTTVEEAAEAYQKSKIEFE 133 79********.**********55.....34******************88877766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.63E-20 | 84 | 132 | No hit | No description |
SuperFamily | SSF54171 | 1.37E-15 | 84 | 134 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.4E-9 | 84 | 127 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.5E-17 | 85 | 148 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.769 | 85 | 142 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-8 | 86 | 97 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.7E-20 | 86 | 133 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-8 | 108 | 124 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MISGKEEKNI DLRSLKTVRV IFNDPYATES SSEDESISGI NPRRPIKPKP QKRYVSKICV 60 PTLIERYEPN SSSGKVTGNR KPVSGFKGVR RRPWGKFAAE IRDPFQKKRK WLGTFTTVEE 120 AAEAYQKSKI EFEEQLGLAN QTGLIKEEAC GSSKLKEKEV VDLIKPCGSS KPEEKEVDST 180 RPSNDTKSNG KTVNRGIAVG YKTFGFGCDD DEEEDGTIGR MLEDQVMTPS ISDIFGDPAF 240 EPNGLWVDDI NTEELNSIFD DFKFDFVVKD KGSIKTSKKN NDEKAVKNSE IESTIANNVD 300 GSTDFWFELE CDPVTDNHQL EDFLEDDFGC LAEADVDSWF NYGATDWI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 89 | 109 | RRRPWGKFAAEIRDPFQKKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10012016m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006393309.1 | 0.0 | ethylene-responsive transcription factor ERF117 | ||||
Swissprot | Q9M9B2 | 1e-103 | EF117_ARATH; Ethylene-responsive transcription factor ERF117 | ||||
TrEMBL | V4JYL3 | 0.0 | V4JYL3_EUTSA; Uncharacterized protein | ||||
STRING | XP_006393309.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16547 | 10 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49120.1 | 2e-84 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10012016m |
Entrez Gene | 18011424 |