PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10012000m
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family M-type_MADS
Protein Properties Length: 293aa    MW: 33897.7 Da    PI: 10.1598
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10012000mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.85.2e-171151343
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                     i n+s r+ tf kR++g+lKK +ELS+LC++ ++ ii+s+ 
  Thhalv10012000m 11 IANDSSRKATFKKRKKGLLKKVNELSTLCGITACAIIYSPY 51
                     89*************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554552.09E-20161IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.17157IPR002100Transcription factor, MADS-box
SMARTSM004323.6E-22160IPR002100Transcription factor, MADS-box
CDDcd002663.41E-15257No hitNo description
PRINTSPR004041.6E-10323IPR002100Transcription factor, MADS-box
PfamPF003193.6E-171151IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MTRKKVKLAY IANDSSRKAT FKKRKKGLLK KVNELSTLCG ITACAIIYSP YDSNPEFLIF  60
RHYRRWTNKK KMVDQDSFLK QRIVKASEHL KKQKKDNRET EMTKIMFQSL DGNTGMFHLN  120
IMDLNDLDYL IEQYLKDINR RIEILKNAGM EMGNVAAIAT ITTAPTAVIH EVGSSSSFAA  180
AAAFFNPFQH HHQQQCRHPP VRHVGFFEQT RNLNLNQNHN KNQQQFFMEI MNHPEQISYA  240
HMSFPFMDDN HHNHHHQQQR ILSDSSTAPT IVSSNSIIPV TSPNVNNDIW FR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAYIANDSSRKATFKKRK
22125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10012000m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006392157.11e-132agamous-like MADS-box protein AGL80
SwissprotQ9FJK33e-98AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLV4KTR31e-180V4KTR3_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006393467.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.13e-82AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]