PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10011987m
Common NameEUTSA_v10011987mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 345aa    MW: 38854.8 Da    PI: 6.648
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10011987mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88e-05176195120
                      EEETTTTEEESSHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                      ++Cp C k+F+r  n++ H+
  Thhalv10011987m 176 FSCPLCFKTFNRYNNMQMHM 195
                      89*****************9 PP
2zf-C2H213.10.0003260282123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C  Cgk F  k + ++H +++
  Thhalv10011987m 260 FACRRCGKAFAVKGDWRTHEKNC 282
                      78*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.9E-5176195IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.66176203IPR007087Zinc finger, C2H2
PROSITE patternPS000280178198IPR007087Zinc finger, C2H2
SuperFamilySSF576673.22E-6246280No hitNo description
Gene3DG3DSA:3.30.160.601.2E-5247280IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.767260280IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MSNPACSNLF TNGFDNTNFT YSSSLSYIYN SNNSFYYPNT TNPNNMAPTT TSTFPNSPPL  60
REALPLLSLS PSRHQEQQDQ HYFMDTDQIS SSNFLNDPHD VTVDLHLGLP NYGDGGSIES  120
YIAPDGTTEE QHHHDQGVEV TVDSHLHDDD DHGDLPRGHH YWIPTPAQIL IGPTQFSCPL  180
CFKTFNRYNN MQMHMWGHGS QYRKGPESLR GTQPTGMLRL PCFCCAPGCK NNIDHPRAKP  240
LKDFRTLQTH YKRKHGSRPF ACRRCGKAFA VKGDWRTHEK NCGKLWYCSC GSDFKHKRSL  300
KDHVKAFGNG HVPCGIDSFG GDHDDNYEAA SDIEQQDDCN NNEC*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00197DAPTransfer from AT1G51220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10011987m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3118100.0AJ311810.2 Arabidopsis thaliana mRNA for WIP5 protein (At1g51220 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006393069.10.0zinc finger protein WIP5
SwissprotQ8W0310.0ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBLV4JXY10.0V4JXY1_EUTSA; Uncharacterized protein
STRINGXP_006393069.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51220.11e-179WIP domain protein 5
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]