PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10011685m | ||||||||
Common Name | EUTSA_v10011685mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | NF-YA | ||||||||
Protein Properties | Length: 309aa MW: 33730.5 Da PI: 10.3543 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 103.1 | 2.5e-32 | 178 | 234 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RR++Rakle+++kl +ksrkpylheSRh hAl+R+RgsgGrF Thhalv10011685m 178 NEPIFVNAKQYHAILRRRKHRAKLEAQNKL-IKSRKPYLHESRHLHALKRARGSGGRF 234 59****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.3E-36 | 176 | 237 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.46 | 177 | 237 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 5.0E-27 | 179 | 234 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 4.8E-23 | 180 | 202 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 182 | 202 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 4.8E-23 | 211 | 234 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0009785 | Biological Process | blue light signaling pathway | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MQVFERKDSS RSSWGNSMPT NSNIQGSQSF NVTRDMMMST QFPSMKHLGL QLQDQDSSST 60 QSTGESGGGE VASFGEHNRY GSSSIVNTNL PGYIENHGKT IESYTQSTTT SSMVSQDSVF 120 HPPPTSGLPS WSLQCAETSH FGGFLAPGYA SQPTVLPHLE MMGLVSSRVA LPHNIQENEP 180 IFVNAKQYHA ILRRRKHRAK LEAQNKLIKS RKPYLHESRH LHALKRARGS GGRFLNTKKL 240 QESSNSLCSS QMANGQDFSK SPRGGGSAIG SSSITPSSNS NRNMFQNPQF RFSGYPSTHH 300 VSALMSGT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 9e-19 | 179 | 239 | 3 | 63 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the blue light (BL) and abscisic acid (ABA) signaling pathways. {ECO:0000250, ECO:0000269|PubMed:17322342}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10011685m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF386957 | 0.0 | AF386957.1 Arabidopsis thaliana Unknown protein (F15I1.26) mRNA, complete cds. | |||
GenBank | AY081445 | 0.0 | AY081445.1 Arabidopsis thaliana unknown protein (At1g54160) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006392710.1 | 0.0 | nuclear transcription factor Y subunit A-5 | ||||
Refseq | XP_024006242.1 | 0.0 | nuclear transcription factor Y subunit A-5 | ||||
Swissprot | Q9SYH4 | 1e-166 | NFYA5_ARATH; Nuclear transcription factor Y subunit A-5 | ||||
TrEMBL | V4MFF3 | 0.0 | V4MFF3_EUTSA; Uncharacterized protein | ||||
STRING | XP_006392710.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11633 | 17 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54160.1 | 1e-140 | nuclear factor Y, subunit A5 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10011685m |
Entrez Gene | 18010531 |