PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10011007m | ||||||||
Common Name | EUTSA_v10011007mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | LBD | ||||||||
Protein Properties | Length: 347aa MW: 38948.4 Da PI: 5.5183 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 122.1 | 3e-38 | 38 | 138 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 aCaaCk++rr+Ca+dC+lapyfpaeqpk f+nvh+lFG++ ++k+l++l+e ++++am+s+++++ +r r+Pv+G++g+ ++lq + +++el Thhalv10011007m 38 ACAACKYQRRRCAADCPLAPYFPAEQPKLFQNVHRLFGVKGIVKILENLDEAQKPEAMKSIIFQSYVRDRNPVHGCLGITQHLQYMIWLAEEEL 131 7********************************************************************************************* PP DUF260 95 allkeel 101 ++++++l Thhalv10011007m 132 KAVNSQL 138 *999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.049 | 37 | 138 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.4E-35 | 38 | 135 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009556 | Biological Process | microsporogenesis | ||||
GO:0009786 | Biological Process | regulation of asymmetric cell division | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MSQIKTIHNP IGSLKRFLDL LWITFILFMT LKGGTNGACA ACKYQRRRCA ADCPLAPYFP 60 AEQPKLFQNV HRLFGVKGIV KILENLDEAQ KPEAMKSIIF QSYVRDRNPV HGCLGITQHL 120 QYMIWLAEEE LKAVNSQLHL YRNQQNNNNN GQNHHHNQMI HEIGEKQEDI TSQLDLGMGL 180 PINNNPSTSF FSPLNVSETQ QHPYTYEANN NNNGYSPSAT YTNSKEILTN TSLAWGQNGF 240 PYHNSGFINQ NESCNEIKSN NGVMAIQSQL VNLQMVSNQQ EGEGDDVHEY DEIHQFLDII 300 DDRQSFADSK EAYASSSGES LKEPIGEIGE NELRSAATCF SLTSVS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-24 | 34 | 141 | 7 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-24 | 34 | 141 | 7 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10011007m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006404319.1 | 0.0 | LOB domain-containing protein 27 | ||||
Swissprot | Q9STS6 | 1e-127 | LBD27_ARATH; LOB domain-containing protein 27 | ||||
TrEMBL | V4LTE6 | 0.0 | V4LTE6_EUTSA; Uncharacterized protein | ||||
STRING | XP_006404319.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6303 | 27 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 1e-129 | LOB domain-containing protein 27 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10011007m |
Entrez Gene | 18021058 |
Publications ? help Back to Top | |||
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