PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10010997m | ||||||||
Common Name | EUTSA_v10010997mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | bZIP | ||||||||
Protein Properties | Length: 155aa MW: 18152.7 Da PI: 9.1695 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 33 | 1.3e-10 | 72 | 132 | 3 | 63 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +++r +rk +NRe+A+rsR +K++ +ee +L+ eN++L ++l ++++ k+e+ Thhalv10010997m 72 DDRRKKRKLSNRESAKRSRVKKQKHLEEMSIQLNQLKIENRELTNQLRYVLYHCERAKTEN 132 789*****************************************99998888888888776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.6E-10 | 66 | 126 | No hit | No description |
SMART | SM00338 | 1.1E-11 | 70 | 134 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.381 | 72 | 135 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 9.2E-8 | 73 | 132 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.44E-9 | 74 | 122 | No hit | No description |
CDD | cd14702 | 3.41E-17 | 75 | 119 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 77 | 92 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MMSTISPVFS SEPCLINPAP AFETGFTPWD ISHLFSVFDT PIDLVPDNES PVSDNNYLNR 60 ASSDIAPTDK TDDRRKKRKL SNRESAKRSR VKKQKHLEEM SIQLNQLKIE NRELTNQLRY 120 VLYHCERAKT ENDRLRLENR ILHDKLLNIR QVLIF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 72 | 79 | DRRKKRKL |
2 | 73 | 94 | RRKKRKLSNRESAKRSRVKKQK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10010997m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK226923 | 5e-77 | AK226923.1 Arabidopsis thaliana mRNA for bZIP transcription factor AtbZip5, complete cds, clone: RAFL09-21-L10. | |||
GenBank | AL132965 | 5e-77 | AL132965.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T16K5. | |||
GenBank | AY085307 | 5e-77 | AY085307.1 Arabidopsis thaliana clone 14432 mRNA, complete sequence. | |||
GenBank | BT024823 | 5e-77 | BT024823.1 Arabidopsis thaliana At3g49760 gene, complete cds. | |||
GenBank | CP002686 | 5e-77 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006404104.2 | 1e-111 | basic leucine zipper 4 | ||||
TrEMBL | V4LSW3 | 1e-110 | V4LSW3_EUTSA; Uncharacterized protein (Fragment) | ||||
STRING | XP_006404104.1 | 1e-111 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3338 | 26 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49760.1 | 1e-70 | basic leucine-zipper 5 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10010997m |
Entrez Gene | 18021302 |