PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10010566m
Common NameEUTSA_v10010566mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family GATA
Protein Properties Length: 310aa    MW: 34464.6 Da    PI: 7.0904
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10010566mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.22.3e-18220254135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      Cs+Cg+ kTp+WR gp g ktLCnaCG++++  +l
  Thhalv10010566m 220 CSHCGVQKTPQWRAGPMGAKTLCNACGVRFKAGRL 254
                      *******************************8875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.8E-951309IPR016679Transcription factor, GATA, plant
SMARTSM004012.4E-15214268IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.609214250IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.38E-13216276No hitNo description
Gene3DG3DSA:3.30.50.109.9E-15218252IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.31E-13219267No hitNo description
PfamPF003203.8E-16220254IPR000679Zinc finger, GATA-type
PROSITE patternPS003440220245IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MESVELGLKN SNRKENTVTG SAQISDDDFS IDDFFDFSDE GVFVEDEAES KLQRNREASV  60
SQNDENILQR SNHFSSAGED FPTSELSVPM DDLAELEWLS NFVEDTLTPY SAPTKKPAWL  120
TRDRRHPIAP VNEDSCFKTP LPVKIRTKRA RTGVSVWSLG SSLLTDSSPT STTSSSSSSG  180
PLSPLWLSGV EFLDEPVVQR QKMMKKKKNP SAIWTQTRRC SHCGVQKTPQ WRAGPMGAKT  240
LCNACGVRFK AGRLLPEYRP ACSPTFSSEL HSNHHRKVVE MRRKKEISDN ADEPGLKQPV  300
QTVQAVPSF*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00404DAPTransfer from AT3G51080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10010566m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006403956.10.0GATA transcription factor 6
SwissprotQ9SD381e-127GATA6_ARATH; GATA transcription factor 6
TrEMBLV4LNR10.0V4LNR1_EUTSA; GATA transcription factor
STRINGXP_006403956.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36982561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51080.11e-109GATA transcription factor 6
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]