PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10010544m
Common NameEUTSA_v10010544mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family GATA
Protein Properties Length: 326aa    MW: 36043.9 Da    PI: 6.5982
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10010544mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.43.9e-18237270134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      C +C +tkTp+WR gp g+ktLCnaCG++y++ +
  Thhalv10010544m 237 CMHCEVTKTPQWRLGPMGPKTLCNACGVRYKSGR 270
                      99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.3E-891324IPR016679Transcription factor, GATA, plant
SMARTSM004011.7E-15231281IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.49231267IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.4E-14235268IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.19E-14235294No hitNo description
CDDcd002022.43E-14236283No hitNo description
PROSITE patternPS003440237262IPR000679Zinc finger, GATA-type
PfamPF003204.2E-16237270IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009845Biological Processseed germination
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MIGQSFPEDL DCGNFFDNMD DLIDFPGGDI DVGFDIGDSD SFPNIWTTHH DTWPTASDPL  60
FSSNTNSDSS TELYVPFEDI VKVERPPSFV EESSLVEKKE DSFSTNTDSS SSHNSQFRSS  120
SPVSVLESSS SSSQTTNTTS LVLPGKHGRP RTKRSRPPVH EKDRVIRDNN VCGADSRLII  180
RIPKQFLSDH SKMITKKKKK KTKVTSSSSS SGIDLEVNGN SNVDISYSSE QNLVRKCMHC  240
EVTKTPQWRL GPMGPKTLCN ACGVRYKSGR LFPEYRPAAS PTFTPALHSN SHKKVAEMRN  300
KRCSDGSYTN EENDLIPNNA YIGVD*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10010544m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3534610.0AK353461.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-37-G07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006403533.10.0GATA transcription factor 8
SwissprotQ9SV301e-167GATA8_ARATH; GATA transcription factor 8
TrEMBLE4MY640.0E4MY64_EUTHA; GATA transcription factor
TrEMBLV4NFX30.0V4NFX3_EUTSA; GATA transcription factor
STRINGXP_006403533.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49752751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.21e-131GATA family protein
Publications ? help Back to Top
  1. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]