PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10009922m
Common NameEUTSA_v10009922mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 261aa    MW: 29492.7 Da    PI: 8.2129
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10009922mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.61.2e-1473125155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      +r+ h e+Er+RR+++ s f +Lr +lP       ++K s ++ +e+Av+YIk+Lq
  Thhalv10009922m  73 KRARHREIERQRRQEVTSLFKNLRYILPLqY---IKGKRSSSDHVEEAVNYIKDLQ 125
                      799**************************66...*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.60E-1170129No hitNo description
SuperFamilySSF474592.75E-1571148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.92272124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-1273125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-1173143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00278130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MDFASSSLLT LACENELDFS SLITPSMFIS FQEHNPSNLI NRCAGTENDG RQRICERTMT  60
DEITQGDVEP KNKRARHREI ERQRRQEVTS LFKNLRYILP LQYIKGKRSS SDHVEEAVNY  120
IKDLQKKIKE MSKKRDRIKR SINHPSSTGE CSSIRPLASS WPSPTSLSSY CSCVGDTQID  180
VKVKTCLVGI EIVASCCIKH ESCLSSILQL VAQEQCLNVV SSISTRLHQR FMHTIVSEVE  240
KGLEVNFSEL QEKMIKMGTS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17284KRARHREIERQRR
2124139QKKIKEMSKKRDRIKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10009922m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006417224.10.0transcription factor bHLH55
SwissprotQ9LN951e-121BH055_ARATH; Transcription factor bHLH55
TrEMBLV4KZW80.0V4KZW8_EUTSA; Uncharacterized protein
STRINGXP_006417224.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62281843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12540.11e-106bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Wisman E, et al.
    Knock-out mutants from an En-1 mutagenized Arabidopsis thaliana population generate phenylpropanoid biosynthesis phenotypes.
    Proc. Natl. Acad. Sci. U.S.A., 1998. 95(21): p. 12432-7
    [PMID:9770503]