PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10009845m

Common Name

EUTSA_v10009845mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

Nin-like

Protein Properties

Length: 256aa MW: 29932.9 Da PI: 7.0504

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10009845m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	77.8	1.3e-24	130	179	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k+ s+e+ls y+++pi++AAkeL+++lT LK++CR++GI+RWPhRki+sl Thhalv10009845m 130 KTFSIETLSLYYNMPITQAAKELNIGLTHLKKTCRELGIQRWPHRKITSL 179 77899******************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.916	110	199	IPR003035	RWP-RK domain
Pfam	PF02042	1.4E-20	133	179	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0051302	Biological Process	regulation of cell division

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MMKSFSKLEC DEVFGKEDKS FSFLKYSSHQ SELTNPFFEL EDDNFSTGNY NYYLPSASSF 60 LALPDIEPIS IVSHEDLLNE YGSVSRTDQE ESMFDEHRRE DVDLVKRTET ETSKKRRGRE 120 DFDSNFSVAK TFSIETLSLY YNMPITQAAK ELNIGLTHLK KTCRELGIQR WPHRKITSLN 180 NLISNLEGEL EKMEDQESED KLRNALEKLK KEKKMIEDFP NLEFKDKTKR LRQACFKAKY 240 KRKRRLVMAK SITSP*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10009845m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC011809	1e-38	AC011809.2 Arabidopsis thaliana chromosome I BAC F6A14 genomic sequence, complete sequence.
GenBank	CP002684	1e-38	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006416567.1	0.0	protein RKD1
Swissprot	Q9M9U9	4e-99	RKD1_ARATH; Protein RKD1
TrEMBL	V4KB34	0.0	V4KB34_EUTSA; Uncharacterized protein
STRING	XP_006416567.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3966	23	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	6e-95	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Thhalv10009845m
Entrez Gene	18993035