PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10009842m
Common NameEUTSA_v10009842mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ERF
Protein Properties Length: 152aa    MW: 16377.2 Da    PI: 6.345
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10009842mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.27.6e-171262155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     s+ykG+r++k +g+Wv+eIr+p +   r r +lg+f tae+Aa a++ a  +l++
  Thhalv10009842m 12 SKYKGIRRRK-WGKWVSEIRVPGT---RERLWLGSFSTAEGAAVAHDVAFFCLHQ 62
                     89*****998.**********943...5*********************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.00E-271272No hitNo description
SuperFamilySSF541711.37E-171273IPR016177DNA-binding domain
PfamPF008471.6E-81260IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-251373IPR001471AP2/ERF domain
SMARTSM003801.7E-321378IPR001471AP2/ERF domain
PROSITE profilePS5103221.4431372IPR001471AP2/ERF domain
PRINTSPR003675.2E-91425IPR001471AP2/ERF domain
PRINTSPR003675.2E-93652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MDNRDDAGET QSKYKGIRRR KWGKWVSEIR VPGTRERLWL GSFSTAEGAA VAHDVAFFCL  60
HQPNSLETLN FPQLLPPSIA SKTSPRSIQQ AASNAGMAVD AGLIVHRNGG GDLMSGNSVY  120
GGTTAYCENG GEVLEPLNIS VYDYLDGHDH V*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00158DAPTransfer from AT1G22810Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10009842m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0866975e-80AY086697.1 Arabidopsis thaliana clone 26867 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006416153.11e-111ethylene-responsive transcription factor ERF019
SwissprotO805421e-79ERF19_ARATH; Ethylene-responsive transcription factor ERF019
TrEMBLV4MRX11e-109V4MRX1_EUTSA; Uncharacterized protein
STRINGXP_006416153.11e-110(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38652860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22810.15e-82ERF family protein
Publications ? help Back to Top
  1. Scarpeci TE,Frea VS,Zanor MI,Valle EM
    Overexpression of AtERF019 delays plant growth and senescence, and improves drought tolerance in Arabidopsis.
    J. Exp. Bot., 2017. 68(3): p. 673-685
    [PMID:28204526]