PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10009619m
Common NameEUTSA_v10009619mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ERF
Protein Properties Length: 284aa    MW: 31209.9 Da    PI: 4.3423
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10009619mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.51.9e-1480126353
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 
                        GVr ++ +g+W+AeIr p     + ++ +lg+++t+eeAaka+   ++++
  Thhalv10009619m  80 LVGVRLRP-SGKWAAEIRNPI----TrTKKWLGTYDTPEEAAKAYADKKLEY 126
                      67******.7*********83....359*****************9888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381237.1E-751262IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000182.57E-1879119No hitNo description
PROSITE profilePS5103216.31879136IPR001471AP2/ERF domain
SMARTSM003804.5E-1179128IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-1379126IPR016177DNA-binding domain
PRINTSPR003672.9E-58091IPR001471AP2/ERF domain
PfamPF008471.9E-980126IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-1681124IPR001471AP2/ERF domain
PRINTSPR003672.9E-5102118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MKSCMKPERE NLVRKVRIVV TDPYATDDSS SDEWIEPKPP KVKRIVHEIT LPSQLSESCL  60
DRCNGVKTSR KSAPRQSNKL VGVRLRPSGK WAAEIRNPIT RTKKWLGTYD TPEEAAKAYA  120
DKKLEYDALG SSCSVASSSV VSVNSSCLRS PDSASVSCVN VDDLSEEKMS LNKDVASSGD  180
STKELLFDFD FSNLEIPDLS FLAAEEDSMV SGEKGVELDF DRFLMDEDSG HHLLDDFSLL  240
DNDINILGSD LPDCDFTDAE LELGDLKFAF SDQLAPPLNI ACP*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10009619m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006415875.10.0ethylene-responsive transcription factor ERF116
RefseqXP_024008729.10.0ethylene-responsive transcription factor ERF116
RefseqXP_024008730.10.0ethylene-responsive transcription factor ERF116
SwissprotQ8GW171e-105EF116_ARATH; Ethylene-responsive transcription factor ERF116
TrEMBLV4L3A50.0V4L3A5_EUTSA; Uncharacterized protein
STRINGXP_006415875.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM151191619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25470.21e-106ERF family protein