PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10009431m | ||||||||
Common Name | EUTSA_v10009431mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 192aa MW: 21201.1 Da PI: 9.1793 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 43.6 | 3.9e-14 | 18 | 64 | 4 | 50 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 e + r vtfskRrngi K EL vLC+ae +++s gk y++ Thhalv10009431m 18 EKNGDRMVTFSKRRNGIYTKLAELTVLCGAETGFLVYSGAGKPYTFG 64 566679***************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.9E-19 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 22.679 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.8E-22 | 8 | 81 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.7E-16 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.8E-17 | 16 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.7E-16 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.7E-16 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MREKKTKGKQ KIKIRKVEKN GDRMVTFSKR RNGIYTKLAE LTVLCGAETG FLVYSGAGKP 60 YTFGSPSFIA VAERFLEINR RVVINGESSS SSAIVDAHKK VKVEELCKTF NNLMEEAEAE 120 AERGKAVAAA KALGTSTLPV ESDDDAWWKS DPDDKEEATR VLASFEEFYE KLCEVAVRRR 180 RSFGCNGAST S* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10009431m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006415528.1 | 1e-138 | agamous-like MADS-box protein AGL29 | ||||
TrEMBL | V4MQB5 | 1e-136 | V4MQB5_EUTSA; Uncharacterized protein | ||||
STRING | XP_006415528.1 | 1e-137 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4676 | 13 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29962.1 | 2e-38 | AGAMOUS-like 64 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10009431m |
Entrez Gene | 18992106 |