PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10008830m
Common NameEUTSA_v10008830mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ERF
Protein Properties Length: 196aa    MW: 20909.4 Da    PI: 6.542
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10008830mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.5e-192372255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +y+GVr ++ +gr++AeIrdp++   + r++lg+f+taeeAa+a++ a+++++g
  Thhalv10008830m 23 HYRGVRKRP-WGRYAAEIRDPCK---KNRVWLGTFDTAEEAARAYDFAARSFRG 72
                     6********.**********854...59**********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.01E-302380No hitNo description
SuperFamilySSF541711.63E-222381IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-312380IPR001471AP2/ERF domain
PfamPF008471.4E-122372IPR001471AP2/ERF domain
SMARTSM003803.5E-342386IPR001471AP2/ERF domain
PROSITE profilePS5103223.8942380IPR001471AP2/ERF domain
PRINTSPR003671.8E-112435IPR001471AP2/ERF domain
PRINTSPR003671.8E-114662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MAPGQENVSE AAVSGGKKIK EVHYRGVRKR PWGRYAAEIR DPCKKNRVWL GTFDTAEEAA  60
RAYDFAARSF RGSKATTNFP LAGDTFSGGD GDGGNVATKA VDANLPATAR DGRLPYANWN  120
NDSGELAPGE AVAGICLDLP HASALREELV RVRYEPIEMG LSIGLRTAVK VESEASSAVD  180
YKLNLDLKLA PSLDV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-222081264ATERF1
3gcc_A1e-222081264ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00124DAPTransfer from AT1G03800Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10008830m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006418202.11e-141ethylene-responsive transcription factor 10
SwissprotQ9ZWA22e-57ERF77_ARATH; Ethylene-responsive transcription factor 10
TrEMBLV4KFM81e-139V4KFM8_EUTSA; Uncharacterized protein
STRINGXP_006418202.11e-140(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03800.11e-45ERF domain protein 10
Publications ? help Back to Top
  1. Lehmeyer M, et al.
    Functional dissection of a strong and specific microbe-associated molecular pattern-responsive synthetic promoter.
    Plant Biotechnol. J., 2016. 14(1): p. 61-71
    [PMID:25819608]