PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10008514m

Common Name

EUTSA_v10008510mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

WRKY

Protein Properties

Length: 262aa MW: 29337.6 Da PI: 5.0216

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10008514m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.5	9e-31	70	128	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp+++ itY+ +Hnh+ Thhalv10008514m 70 SDSWAWRKYGQKPIKGSPYPRGYYRCSSTkGCPARKQVERSRDDPTMILITYTCDHNHP 128 69***********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.6E-32	60	130	IPR003657	WRKY domain
PROSITE profile	PS50811	31.743	64	130	IPR003657	WRKY domain
SuperFamily	SSF118290	1.96E-26	65	130	IPR003657	WRKY domain
SMART	SM00774	2.2E-35	69	129	IPR003657	WRKY domain
Pfam	PF03106	8.9E-26	71	128	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MKRGLEMARS YNDHESSQET GPESPNSSTF NAGISSHSPK RRRSIEKRVV NVPMKEMEGT 60 RHKGDTTPPS DSWAWRKYGQ KPIKGSPYPR GYYRCSSTKG CPARKQVERS RDDPTMILIT 120 YTCDHNHPWP LTSSSRNGPK PKPEPKPAPE VVPEVEPEDE EEGNNNKFMV LGREIETTPS 180 CVVDEFAWFS EMETTSSTIL ESPIFSSEKK TAVSAEADDV EVFFPMGEED ESLFADLGEL 240 PECSVVFRHR SSVVGSQVEI F*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	5e-20	47	130	6	79	Disease resistance protein RRS1
5w3x_D	5e-20	47	130	6	79	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00167	DAP	Transfer from AT1G29280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10008514m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF430071	0.0	KF430071.1 Brassica rapa WRKY transcription factor 65 (WRKY65) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006415591.1	0.0	probable WRKY transcription factor 65 isoform X2
Swissprot	Q9LP56	1e-153	WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBL	V4KRK5	0.0	V4KRK5_EUTSA; Uncharacterized protein
STRING	XP_006415592.1	1e-170	(Eutrema salsugineum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29280.1	1e-155	WRKY DNA-binding protein 65

Link Out ? help Back to Top
Phytozome	Thhalv10008514m
Entrez Gene	18992164

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796]