PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10008069m
Common NameEUTSA_v10008054mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family G2-like
Protein Properties Length: 352aa    MW: 39561.7 Da    PI: 6.1043
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10008069mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like95.34.7e-30187241156
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      k+r++W+++LH+rF++a+++LGG++ AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  Thhalv10008069m 187 KQRRCWSSQLHRRFLNALQHLGGPH-ATPKQIRELMKVDGLTNDEVKSHLQKYRLH 241
                      79*********************98.****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.711184243IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-27186244IPR009057Homeodomain-like
SuperFamilySSF466891.55E-18186244IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-27187241IPR006447Myb domain, plants
PfamPF002495.1E-6189239IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0016036Biological Processcellular response to phosphate starvation
GO:0032107Biological Processregulation of response to nutrient levels
GO:0080022Biological Processprimary root development
GO:1901699Biological Processcellular response to nitrogen compound
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MIKKLSNMNY NQKRERCGQY IEALEEERRK IHVFQRELPL CLDLVTQAIE ACKREVPETT  60
VENAYGQPEC SEQTTGECGP VLEQFLTIKD SSTSNEEEQE EEDDELDDEH GNHDPDKDSE  120
DKNMKSDWLK SVQLWNQPDP LLLKEERSQR EMMETVVNRD ESMRKDPATS GGDGRKREAE  180
KDGGGRKQRR CWSSQLHRRF LNALQHLGGP HATPKQIREL MKVDGLTNDE VKSHLQKYRL  240
HTRRPSQPAP NSGNSQTQHF VVVGGLWVPQ SDYSTGKTTG GATASGTTTT TNTGIYGAMA  300
APPPPQWPSH SNFRSSIIVE EGSGSHSEEV VVRCSSPAMS SSTRNHYVKK N*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in nitrate and phosphate signaling in roots. Integrates nitrate and phosphate starvation responses and adaptation of root architecture depending on nutrient availabilities. Acts downstream of the nitrate sensor and transporter NPF6.3/NRT1.1. Represses primary root development in response to phosphate deficiency conditions, only when nitrate is present (PubMed:25723764). Involved in the modulation of primary root and root hair growth in phosphate-deprived environement (PubMed:19341407). May be required for suppressing abscisic acid (ABA) signaling in germinating embryo axis, which promotes the timely germination of seeds (PubMed:22545134). {ECO:0000269|PubMed:19341407, ECO:0000269|PubMed:22545134, ECO:0000269|PubMed:25723764}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00140DAPTransfer from AT1G13300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10008069m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by nitrate (PubMed:25723764). Down-regulated under nitrate deprivation conditions (PubMed:27419465). {ECO:0000269|PubMed:25723764, ECO:0000269|PubMed:27419465}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006417135.10.0transcription factor HRS1
RefseqXP_024008766.10.0transcription factor HRS1
SwissprotQ9FX670.0HRS1_ARATH; Transcription factor HRS1
TrEMBLV4KZQ20.0V4KZQ2_EUTSA; Uncharacterized protein
STRINGXP_006417135.10.0(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13300.10.0G2-like family protein
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]
  2. Kiba T, et al.
    Repression of Nitrogen Starvation Responses by Members of the Arabidopsis GARP-Type Transcription Factor NIGT1/HRS1 Subfamily.
    Plant Cell, 2018. 30(4): p. 925-945
    [PMID:29622567]