PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10007938m
Common NameEUTSA_v10007938mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 379aa    MW: 42006.8 Da    PI: 8.6819
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10007938mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.6e-05931123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ C+k F++  +L  Hir H
  Thhalv10007938m  9 FVCKFCNKKFPSGKSLGGHIRIH 31
                     89*******************99 PP
2zf-C2H212.70.000396686323
                     ETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                     C  Cgk F +   L  H+ +H
  Thhalv10007938m 66 CRECGKGFDSLKALCAHMDSH 86
                     99****************999 PP
3zf-C2H213.10.00028327349123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++Cp+C k+F++   L  H r+H
  Thhalv10007938m 327 HECPICFKVFKSGQALGGHKRSH 349
                      79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.0E-6633IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.5E-8731No hitNo description
SMARTSM003550.0065931IPR015880Zinc finger, C2H2-like
PfamPF139128.8E-6927IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.593936IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SuperFamilySSF576676.5E-85986No hitNo description
SMARTSM003550.0656486IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.0766491IPR007087Zinc finger, C2H2
PfamPF139120.00246588IPR007087Zinc finger, C2H2
PROSITE patternPS0002806586IPR007087Zinc finger, C2H2
SuperFamilySSF576674.25E-5324353No hitNo description
PROSITE profilePS5015710.492327354IPR007087Zinc finger, C2H2
SMARTSM003550.083327349IPR015880Zinc finger, C2H2-like
PfamPF139128.0E-11327349IPR007087Zinc finger, C2H2
PROSITE patternPS000280329349IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MEKSKEKEFV CKFCNKKFPS GKSLGGHIRI HTNQYSVDYN GNRLREKNKR LVDQREMKQQ  60
QRQLCCRECG KGFDSLKALC AHMDSHSEGE KMVMDGQSDT ETSSARIRKR SKRVMRQSNS  120
GSFSNGSSSS ASEIDQEHKN TALSLMMMSR DSKGHNLVVN SMAESSENNS VILETKSSSG  180
EHLKKVSNVK NQVLETDKVA SDDQLRSAAD DDNGAILCDS DSDSDYFIHG PKKSDSDISV  240
DGSLRNTGIG SGFNIFKNSD ELGLKEGGSK YELRKSKRIF PSYENGAHSL ETDSCADTYS  300
KIHRSSDSKS PMVKKASGGT KKKSKGHECP ICFKVFKSGQ ALGGHKRSHS FENQEHRINH  360
HAAEMRIDLN LPAMDIDE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10007938m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934793e-40AB493479.1 Arabidopsis thaliana At1g26590 mRNA for hypothetical protein, partial cds, clone: RAAt1g26590.
GenBankCP0026843e-40CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankT1K73e-40AC013427.3 Sequence of BAC T1K7 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006415935.10.0zinc finger protein ZAT9
TrEMBLV4L3G50.0V4L3G5_EUTSA; Uncharacterized protein
STRINGXP_006415935.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19002162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26590.11e-120C2H2-like zinc finger protein