PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10007691m
Common NameEUTSA_v10007691mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family WRKY
Protein Properties Length: 431aa    MW: 46617.3 Da    PI: 5.2342
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10007691mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.54.2e-31211269259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D ++WrKYGqK++kgs+fpr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  Thhalv10007691m 211 SDLWAWRKYGQKPIKGSPFPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 269
                      699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381532.3E-2441430No hitNo description
Gene3DG3DSA:2.20.25.807.5E-31204271IPR003657WRKY domain
PROSITE profilePS5081132.879205271IPR003657WRKY domain
SuperFamilySSF1182903.4E-26208271IPR003657WRKY domain
SMARTSM007746.3E-38210270IPR003657WRKY domain
PfamPF031067.5E-26212269IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MCSVFELLEM DNFQGDLTDV VRGIGGHVLS PELPPPPSIW PLPPPSPSDL HINPFGDPFV  60
SMTDPLLQEL NAVTNSGYFS PAGDNNNSNN SFLVPKVLEE DHIKSQCSIF PRIRISHSNI  120
IHDSSPCNSP AMSAHVVAAA AAASPRGIIN VDTNSPRNCL LVDGNTFSSQ IQISSPRNLG  180
LKRRKSQAKK VVCIPAPAAM NSRSSGEVVP SDLWAWRKYG QKPIKGSPFP RGYYRCSSSK  240
GCSARKQVER SRTDPNMLVI TYTSEHNHPW PIQRNALAGS TRSSSSSSSP NPNSSKSSVA  300
NANVNANATA SSSCSQNNPH LPSSSTTPPP LSASAVKDEH QEDDMELENV EDDEDNQIAP  360
YRPELHHQHN QPDDFFADLE ELEGDSLSML LSQGCSGDRN NKTTASDGIS DFFGWSGENN  420
NNDDQDSRSL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-25185271279Disease resistance protein RRS1
5w3x_D1e-25185271279Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00171DAPTransfer from AT1G30650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10007691m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2283430.0AK228343.1 Arabidopsis thaliana mRNA for putative DNA-binding protein, complete cds, clone: RAFL14-76-G23.
GenBankAY0854820.0AY085482.1 Arabidopsis thaliana clone 153465 mRNA, complete sequence.
GenBankBT0064680.0BT006468.1 Arabidopsis thaliana At1g30650 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006415439.10.0probable WRKY transcription factor 14
SwissprotQ9SA800.0WRK14_ARATH; Probable WRKY transcription factor 14
TrEMBLV4KUS10.0V4KUS1_EUTSA; Uncharacterized protein
STRINGXP_006415439.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30852865
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30650.10.0WRKY DNA-binding protein 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]