PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10007461m

Common Name

EUTSA_v10007461mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

WRKY

Protein Properties

Length: 495aa MW: 54775.7 Da PI: 7.2039

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10007461m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.3	8.9e-30	200	259	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r++ed ++++ tYeg+Hnh+ Thhalv10007461m 200 MNDGCQWRKYGQKIAKGNPCPRAYYRCTIApSCPVRKQVQRCSEDMSILISTYEGTHNHP 259 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.0E-31	185	261	IPR003657	WRKY domain
SuperFamily	SSF118290	8.11E-27	193	261	IPR003657	WRKY domain
PROSITE profile	PS50811	28.334	195	261	IPR003657	WRKY domain
SMART	SM00774	3.3E-35	200	260	IPR003657	WRKY domain
Pfam	PF03106	3.6E-26	201	259	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 495 aa Download sequence Send to blast
MRFKLDSTKV EMEEAKEENR RLKSSLSRIK KEFEILQTQY NQLMVQHEDR NKFSSKGHHQ 60 DEDKEKISER EELVLLSLGR RLKSPVPSGS MTNNEENKKD FMDETGDDKK NDDHEKGSDQ 120 GIRMGFEYKD LSNPNEKKEI DHNQQTLPLE ISNNNKIPSE NSFGFKNDGD DNEVEEELLP 180 QNLIKKTRVS VRSRCETPTM NDGCQWRKYG QKIAKGNPCP RAYYRCTIAP SCPVRKQVQR 240 CSEDMSILIS TYEGTHNHPL PMSATAMASA TSAAASMLLP GASSSSSSSS VPADLHGLNF 300 SLSGNNVTPK PKSHNFLQTS SPSSSGHPTV TLDLTTPSSS QQPFLSMLNR FNSTSSNVSR 360 SNSYPSTNLN FSNANTLMIW GGGGGNRNEQ YRAAYGNIST HQQPPYHHMI QTRTAGSSFD 420 PFGRSSSSST RPIQTNLDYV GNITHQMQSL PAETIKAITT DPTFQSALAT ALSSIIGGDL 480 KMDNVTSNEA EKSP*

Sequence ? help Back to Top

Protein Sequence Length: 495 aa Download sequence Send to blast

MRFKLDSTKV EMEEAKEENR RLKSSLSRIK KEFEILQTQY NQLMVQHEDR NKFSSKGHHQ  60
DEDKEKISER EELVLLSLGR RLKSPVPSGS MTNNEENKKD FMDETGDDKK NDDHEKGSDQ  120
GIRMGFEYKD LSNPNEKKEI DHNQQTLPLE ISNNNKIPSE NSFGFKNDGD DNEVEEELLP  180
QNLIKKTRVS VRSRCETPTM NDGCQWRKYG QKIAKGNPCP RAYYRCTIAP SCPVRKQVQR  240
CSEDMSILIS TYEGTHNHPL PMSATAMASA TSAAASMLLP GASSSSSSSS VPADLHGLNF  300
SLSGNNVTPK PKSHNFLQTS SPSSSGHPTV TLDLTTPSSS QQPFLSMLNR FNSTSSNVSR  360
SNSYPSTNLN FSNANTLMIW GGGGGNRNEQ YRAAYGNIST HQQPPYHHMI QTRTAGSSFD  420
PFGRSSSSST RPIQTNLDYV GNITHQMQSL PAETIKAITT DPTFQSALAT ALSSIIGGDL  480
KMDNVTSNEA EKSP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-20	187	261	1	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10007461m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006416557.2	0.0	probable WRKY transcription factor 61
Swissprot	Q8VWV6	0.0	WRK61_ARATH; Probable WRKY transcription factor 61
TrEMBL	V4KB27	0.0	V4KB27_EUTSA; Uncharacterized protein
STRING	XP_006416557.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12663	17	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18860.1	0.0	WRKY DNA-binding protein 61

Link Out ? help Back to Top
Phytozome	Thhalv10007461m
Entrez Gene	18993028

Publications ? help Back to Top
Gao R,Liu P,Yong Y,Wong SM Genome-wide transcriptomic analysis reveals correlation between higher WRKY61 expression and reduced symptom severity in Turnip crinkle virus infected Arabidopsis thaliana. Sci Rep, 2016. 6: p. 24604 [PMID:27086702]