PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10006979m
Common NameEUTSA_v10006979mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family STAT
Protein Properties Length: 682aa    MW: 76790.7 Da    PI: 4.9499
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10006979mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT186.14.5e-582263441116
             STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisq...LsskcdnrLfrikfeipk 91 
                      ldvvl+na+gqpv+kdv+v asLlyadsg++veks+d+eapLL++y+Gvefs+ed+p+ ll+G+asfklkisq   Lssk+d+rLf+ikfeip+
  Thhalv10006979m 226 LDVVLSNAIGQPVHKDVKVLASLLYADSGTPVEKSSDSEAPLLVTYEGVEFSAEDKPCSLLNGCASFKLKISQvviLSSKSDKRLFCIKFEIPN 319
                      8************************************************************************8888***************** PP

             STAT  92 lkkypfleavskpirCisrsrntrs 116
                        +ypfleav++pirCis++r++ +
  Thhalv10006979m 320 KGSYPFLEAVTNPIRCISKNRDSVA 344
                      *********************9755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF498992.37E-529165IPR013320Concanavalin A-like lectin/glucanase domain
CDDcd103383.94E-68576681No hitNo description
Gene3DG3DSA:3.30.505.104.4E-9583643IPR000980SH2 domain
SuperFamilySSF555502.7E-12584674IPR000980SH2 domain
PROSITE profilePS5000110.671587681IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MAGDFAIETE KYSLLEDFNV DVEVENQEFE TFSLCFWVYL LDSTTYPSTI IRQVHSGMCV  60
SAPFLVLDEN KKMMLLPLTL LHKEAPDPVN TSSWTEVPNV STKAEFPLQK WVQVGCEVSR  120
NYMRLHICGE IAGEQVLTSL MSNGTNSDCA RKISLFSVGG DGYSVQGFIH CAEVLPSSVP  180
AKYHYTKDPP LWLSVEKPST SGIELDEDGV WTIVGGMASC RKIFSLDVVL SNAIGQPVHK  240
DVKVLASLLY ADSGTPVEKS SDSEAPLLVT YEGVEFSAED KPCSLLNGCA SFKLKISQVV  300
ILSSKSDKRL FCIKFEIPNK GSYPFLEAVT NPIRCISKNR DSVAPKRLNH IDHSLEFASS  360
NGASDILHSS SSMKRIRLEE EKIPESEFEN GNGTSMEWKP QSHGEEEDEE EDNSSTDSEN  420
TEIRDSSGFK RYTISDSTIF RYCLGNLTER SLLLKEITNN SSDEEVSEFA DQVSLYSGCS  480
HHSYQIKMAR KLIAEGTNAW ILISRNYQRV HWDNVVIEIE EHFMRIAKCS SRSLTHQDFE  540
LLRRICGCYE YITQENFEKM WCWLFPVASA ISRGLINGMW RSSSPKWIEG FVTKEEAEHS  600
LQSQEPGTFI LRFPTSRSWP HPDSGSLVVT YVGHDFVIHH RLLTIDHICD SSERYTDAKP  660
LQDMLLAEPE LSRLGRIIRS I*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10006979m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0461800.0BT046180.1 Arabidopsis thaliana unknown protein (At1g17040) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024008335.10.0SH2 domain-containing protein A
SwissprotB5X5610.0SHA_ARATH; SH2 domain-containing protein A
TrEMBLV4KYL30.0V4KYL3_EUTSA; Uncharacterized protein
STRINGXP_006416749.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52052645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17040.10.0SH2 domain protein A
Publications ? help Back to Top
  1. Yamada Y,Wang HY,Fukuzawa M,Barton GJ,Williams JG
    A new family of transcription factors.
    Development, 2008. 135(18): p. 3093-101
    [PMID:18701541]