PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10006463m
Common NameEUTSA_v10006463mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family HSF
Protein Properties Length: 265aa    MW: 30711.8 Da    PI: 6.1158
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10006463mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.22.6e-33241162103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k++e ++d+++++++sw++ g sfvv+d+++f+ ++Lp yFkh+nf+SFvRQLn+YgF+k++ e+         weF ++ F  g++ ll+
  Thhalv10006463m  24 FLRKTFEAVDDPNTNHIVSWNRGGISFVVWDPHSFSATILPLYFKHNNFSSFVRQLNTYGFRKIEAER---------WEFMNEGFLMGQRGLLK 108
                      9****************************************************************999.........***************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  96 kikrkkse 103
                      +ikrk+s+
  Thhalv10006463m 109 SIKRKTSS 116
                      *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.7E-3416108IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.13E-3220113IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.4E-4920113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-182447IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.0E-2924113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-186274IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406387IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-187587IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009644Biological Processresponse to high light intensity
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MEPSSSNRAR SMPVPMEEGG PCPFLRKTFE AVDDPNTNHI VSWNRGGISF VVWDPHSFSA  60
TILPLYFKHN NFSSFVRQLN TYGFRKIEAE RWEFMNEGFL MGQRGLLKSI KRKTSSSAPP  120
SLHNSQPDDP CVELRQERHV LMMEISRLRQ QEQRARGYIE AMEQRINGTE KKQRHMMSFL  180
RRAVQDPSLL QQLLEKQRKE AAIDQVKLEP VEHVSELEAL ALEMQGYGRQ RIENVEKELD  240
DGFWEELLMN NHNLVDGEEE ANIL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-222411620123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10006463m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2373041e-141AC237304.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006I08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024012904.10.0heat stress transcription factor A-7b
SwissprotQ9M1V51e-144HFA7B_ARATH; Heat stress transcription factor A-7b
TrEMBLV4LV220.0V4LV22_EUTSA; Uncharacterized protein
STRINGXP_006402285.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148361619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G63350.11e-142HSF family protein