PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10006451m
Common NameEUTSA_v10006451mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NAC
Protein Properties Length: 170aa    MW: 19887.5 Da    PI: 4.731
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10006451mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM54.73.4e-1781351127
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                      lp+GfrF+Ptd ++ +++Lkkk+ g+++++  + +e+ d+++ +P+dLp     +ek++yf++++ +    g+ ++       W + g+d+   
  Thhalv10006451m   8 LPVGFRFRPTDYQMSSYFLKKKALGQPMRVRIIPEEClDLFSKHPSDLPGF--PKEKHLYFYCRKTN----GQDPQN-----LWTQIGEDTVFD 90 
                      79****************************66566669***********43..36799*****9855....445554.....6******98888 PP

              NAM  94 skkgelvglkktLvfy...........kgrapkgektdWvmheyr 127
                       +++  vg+k+++++              +++   + +W m+e +
  Thhalv10006451m  91 PQEEICVGIKRSFTLIeheeesndirlPDEEELNPRVEWYMDEIS 135
                      778888*********944333332222133333348888888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-257153IPR003441NAC domain
PROSITE profilePS5100524.6028153IPR003441NAC domain
PfamPF023659.2E-109135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MEPKFRPLPV GFRFRPTDYQ MSSYFLKKKA LGQPMRVRII PEECLDLFSK HPSDLPGFPK  60
EKHLYFYCRK TNGQDPQNLW TQIGEDTVFD PQEEICVGIK RSFTLIEHEE ESNDIRLPDE  120
EELNPRVEWY MDEISLPTTV ADTDWVLCHV FYKEEGASKS LTILESQSH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10006451m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024012937.11e-114NAC domain-containing protein 104
TrEMBLV4NEC31e-123V4NEC3_EUTSA; Uncharacterized protein
STRINGXP_006402973.11e-124(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86041736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56520.18e-66NAC family protein