PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10006173m

Common Name

EUTSA_v10006173mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

FAR1

Protein Properties

Length: 268aa MW: 30691.4 Da PI: 5.5848

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10006173m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	94.1	1.7e-29	102	189	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGF +r+sk ++s+++g+ + r++vC+keg+r ++k++ k r+raetr+gC+a++ ++ke++gkw++tk+++eHnH+l+p Thhalv10006173m 102 FYNAYATKVGFVIRVSKLSRSRHDGSPIGRQLVCNKEGYRLPSKRD--KVIRQRAETRVGCRAMILIRKENSGKWVITKFVKEHNHPLMP 189 9****************************************999..999**********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.8E-27	102	189	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MDFRIDNGVA SEMMMGDPVE LEVTTVENHN EMGESSGQAM IEQDDENHNE VGENSGHQEM 60 LEQDEKVDPD SISLAAPDMV EVQADEPYVG QEFESEAAAH GFYNAYATKV GFVIRVSKLS 120 RSRHDGSPIG RQLVCNKEGY RLPSKRDKVI RQRAETRVGC RAMILIRKEN SGKWVITKFV 180 KEHNHPLMPG RVRRGCIYDQ YPNEHDKIQE LMQQLAAEKK RAATYKKHLE LLFEQIEQHN 240 ESLTKRIQHI VDNVRDLEQR DHQQNPV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10006173m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY058089	0.0	AY058089.1 Arabidopsis thaliana AT3g59470/T16L24_20 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006402686.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBL	V4LK97	0.0	V4LK97_EUTSA; Uncharacterized protein
STRING	XP_006402686.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7302	25	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	1e-176	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Thhalv10006173m
Entrez Gene	18020243