PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10006110m
Common NameEUTSA_v10006110mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family HD-ZIP
Protein Properties Length: 314aa    MW: 34389.6 Da    PI: 8.1488
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10006110mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.61e-18159213256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ +++keq  +Lee F+++++++ +++  LAk+l+L +rqV vWFqNrRa+ k
  Thhalv10006110m 159 RKKLRLSKEQALVLEETFKEHSTLNPKQKMALAKQLNLRTRQVEVWFQNRRARTK 213
                      788899***********************************************98 PP
2HD-ZIP_I/II122.91.6e-39159248191
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                      +kk+rlskeq+ +LEe+F+e+++L+p++K++la++L+l++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
  Thhalv10006110m 159 RKKLRLSKEQALVLEETFKEHSTLNPKQKMALAKQLNLRTRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVSELR-AL 248
                      69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046184.4E-361115IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.603.9E-19142213IPR009057Homeodomain-like
SuperFamilySSF466896.84E-19143216IPR009057Homeodomain-like
PROSITE profilePS5007117.313155215IPR001356Homeobox domain
SMARTSM003892.6E-15157219IPR001356Homeobox domain
CDDcd000863.15E-14159216No hitNo description
PfamPF000464.0E-16159213IPR001356Homeobox domain
PROSITE patternPS000270190213IPR017970Homeobox, conserved site
PfamPF021835.7E-11215249IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.6E-26215258IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MGERDDGLGL SLSLSLGSNQ NESSSRFNPM PLASFPSSSH MHMQNHYSHP QKIQNNWIQM  60
FQSSERNSDV RSFLRGIDVN RAPSTVVVDV EEDAGVSSPN STVSSVMSGK RSERELMAAA  120
AAGGVRVIED NEAERASCSL GGGGSDDDDG GGNGDDGSRK KLRLSKEQAL VLEETFKEHS  180
TLNPKQKMAL AKQLNLRTRQ VEVWFQNRRA RTKLKQTEVD CEYLKRCCEN LTEENRRLQK  240
EVSELRALKL SPHLYMHMKP PTTLTMCPSC ERVAVTSSSS SVAPPAMTSS SPMGPMSPWA  300
AIPLRQRPAA GSH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157163SRKKLRL
2207215RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10006110m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4407810.0AJ440781.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein HAT3 (hat3 gene).
GenBankAY0995650.0AY099565.1 Arabidopsis thaliana homeobox-leucine zipper protein HAT3 (At3g60390) mRNA, complete cds.
GenBankBT0087130.0BT008713.1 Arabidopsis thaliana At3g60390 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006402586.10.0homeobox-leucine zipper protein HAT3
SwissprotP466021e-180HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLV4LK090.0V4LK09_EUTSA; Uncharacterized protein
STRINGXP_006402586.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25772772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.11e-139homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]