PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10005452m
Common NameEUTSA_v10005452mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family M-type_MADS
Protein Properties Length: 322aa    MW: 36354.8 Da    PI: 8.7635
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10005452mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.91.8e-1538771250
                     HHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS
           SRF-TF 12 tfskRrngilKKAeELSvLCdaevaviifsstgkl.yeys 50
                       s R +++l KA+ELS+LCd++++vi+++ +g+l ++++
  Thhalv10005452m 38 NISMREQTMLNKAYELSTLCDIQACVIYYGRDGELiKTWP 77
                     5688*****************************9856786 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.4E-5678IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.89E-1332113IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.5733379IPR002100Transcription factor, MADS-box
CDDcd002667.23E-1733104No hitNo description
PfamPF003199.3E-103472IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MDSSSSTKSK TKLSERYQTS FKKASFSSTI PASKKNMNIS MREQTMLNKA YELSTLCDIQ  60
ACVIYYGRDG ELIKTWPEDQ SKVRAMAEKF HKLSHNEKRK KSTNLSQFLN KKLNDEKKRS  120
LDQNDNKFSD KVLAIEHSLE TRLRIFQDKL RLLQTKPNQS LAVLSDCGSS SSTVQNHNFM  180
DSSVFFSSDI SPNPLLINEP PMMNLSTPLI NDQSLAANSS GFTTHLSPSL IEDPHHQSLT  240
TNHQSRFSTF LYNHDNNSFY QLGDSVSRFD QATAPLSMDL LGPQGFNSNN MVIPPQMQTL  300
NPLFHYDQFG GWNQTPSFGV Q*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10005452m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006394913.10.0agamous-like MADS-box protein AGL53
SwissprotQ7X9N24e-79AGL53_ARATH; Agamous-like MADS-box protein AGL53
TrEMBLV4KLU20.0V4KLU2_EUTSA; Uncharacterized protein
STRINGXP_006394913.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM5753944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27070.11e-74AGAMOUS-like 53
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]