PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10005326m
Common NameEUTSA_v10005326mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ERF
Protein Properties Length: 278aa    MW: 31206.3 Da    PI: 9.0704
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10005326mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62e-20104154256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       y+GVr+++ +g+WvAeIr p++   r+r +lg+f taeeAa a+++a+ k++ge
  Thhalv10005326m 104 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFQTAEEAALAYDQAAHKIRGE 154
                      59******9.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.40E-34103162No hitNo description
PROSITE profilePS5103222.866104161IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-32104161IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-23104162IPR016177DNA-binding domain
SMARTSM003801.2E-36104167IPR001471AP2/ERF domain
PRINTSPR003674.2E-11105116IPR001471AP2/ERF domain
PfamPF008476.6E-14105154IPR001471AP2/ERF domain
PRINTSPR003674.2E-11127143IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MNGCIEEFMN ALEPFMKVTS STTSSTPSSS KPKPLTPNNQ TLPVYQAGPI GLNQLTPTQI  60
LQIQTELHLR QNQSRRRGGG QKLHPLTVKP TPMKKTDVTK PVKLYRGVRQ RHWGKWVAEI  120
RLPKNRTRLW LGTFQTAEEA ALAYDQAAHK IRGENARLNF PIIARYGEYK QSLSPSINAK  180
IESICNSSDT LPEVKKPAKT EEGSFGFHYT GPKPEQERED SENFGCGFSG SSPESDITLL  240
DFSREWMKED ESFFMGLQKF PSLEIDWEAI DKLSGST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-21103168470ATERF1
3gcc_A1e-21103168470ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00585DAPTransfer from AT5G65130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10005326m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0133951e-109AB013395.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQN23.
GenBankAY5608581e-109AY560858.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g65130) mRNA, complete cds.
GenBankCP0026881e-109CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankDQ4471091e-109DQ447109.1 Arabidopsis thaliana clone pENTR221-At5g65130 AP2 domain-containing transcription factor (At5g65130) mRNA, complete cds.
GenBankDQ6533921e-109DQ653392.1 Arabidopsis thaliana clone 0000013473_0000009703 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006394075.20.0ethylene-responsive transcription factor ERF057
SwissprotQ9FJQ21e-135ERF57_ARATH; Ethylene-responsive transcription factor ERF057
TrEMBLV4MJ070.0V4MJ07_EUTSA; Uncharacterized protein
STRINGXP_006394075.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134991728
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65130.11e-102ERF family protein
Publications ? help Back to Top
  1. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]