PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10005029m

Common Name

EUTSA_v10005029mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

WRKY

Protein Properties

Length: 169aa MW: 18880.8 Da PI: 6.7899

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10005029m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	101.1	6.8e-32	107	165	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYG+K+vk+s++pr+Y++C+ gCpvkk+ver+++dp++v++tYeg+Hnh+ Thhalv10005029m 107 LDDGFKWRKYGKKMVKNSPNPRNYFKCSVDGCPVKKRVERDRDDPSFVITTYEGSHNHS 165 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.2E-34	93	166	IPR003657	WRKY domain
SuperFamily	SSF118290	4.32E-28	100	165	IPR003657	WRKY domain
PROSITE profile	PS50811	29.608	102	167	IPR003657	WRKY domain
SMART	SM00774	3.9E-37	107	166	IPR003657	WRKY domain
Pfam	PF03106	2.9E-25	108	164	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:0050832	Biological Process	defense response to fungus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MNDAETNLAR SSSDDTHTGF KLPELYLSDE WMDDDLVSAV TGMNHSYGDD AAAFFSGSSS 60 CFSHHESPST NASPPAASTV QENQIKKEKK KVKERVAFKT RSEVEVLDDG FKWRKYGKKM 120 VKNSPNPRNY FKCSVDGCPV KKRVERDRDD PSFVITTYEG SHNHSSMN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	3e-26	97	164	7	74	Probable WRKY transcription factor 4
2lex_A	3e-26	97	164	7	74	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00531	DAP	Transfer from AT5G26170	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10005029m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY071847	1e-131	AY071847.1 Arabidopsis thaliana WRKY transcription factor 50 (WRKY50) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006394862.1	1e-124	probable WRKY transcription factor 50
Swissprot	Q8VWQ5	2e-88	WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBL	V4KXM5	1e-122	V4KXM5_EUTSA; Uncharacterized protein
STRING	XP_006394862.1	1e-123	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6121	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	1e-73	WRKY DNA-binding protein 50

Link Out ? help Back to Top
Phytozome	Thhalv10005029m
Entrez Gene	18013336

Publications ? help Back to Top
Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821]