PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10004893m

Common Name

EUTSA_v10004893mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

M-type_MADS

Protein Properties

Length: 220aa MW: 25646.3 Da PI: 9.6372

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10004893m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	53.4	3.4e-17	11	50	3	42
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 ien+s r+ t+ kR+ gilKKA+EL +LCd+ +av+i s+ Thhalv10004893m 11 IENESSRKSTYKKRKSGILKKAYELATLCDVPIAVMIDSP 50 9**********************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	7.3E-25	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	19.273	1	47	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	9.94E-24	2	95	IPR002100	Transcription factor, MADS-box
CDD	cd00266	6.80E-26	2	85	No hit	No description
PRINTS	PR00404	4.4E-12	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	9.6E-17	11	50	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.4E-12	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.4E-12	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MTRQKVKMVY IENESSRKST YKKRKSGILK KAYELATLCD VPIAVMIDSP YDLSPEMWPS 60 REAVEHVVSE WNKLSVMEKT KKMVNQETFL QQRIFKSNES WKKMWKENKE LEMKEVMFDC 120 LSGKTSVTRT KKSDLRDFNC VIEQYLKDLN RRVEILKNHD SSSSSAADVA TTTTHDINMP 180 RFETGSSSAG FYDRIRDQIE NSLNVKHNVK DLDLNKKQW*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269\|PubMed:16798889, ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10004893m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006394900.1	1e-162	agamous-like MADS-box protein AGL80
Swissprot	Q9FJK3	5e-51	AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBL	V4ML82	1e-161	V4ML82_EUTSA; Uncharacterized protein
STRING	XP_006394900.1	1e-162	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM70	28	415

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26630.1	3e-87	M-type_MADS family protein

Link Out ? help Back to Top
Phytozome	Thhalv10004893m
Entrez Gene	18012986

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]