PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10004870m
Common NameEUTSA_v10004870mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ERF
Protein Properties Length: 229aa    MW: 24930.6 Da    PI: 5.7662
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10004870mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-183686155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f ++e+Aa+a++ a+++++g
  Thhalv10004870m 36 PVYRGVRKRS-WGKWVSEIREPRK---KSRIWLGTFPSPEMAARAHDVAALSIKG 86
                     68*****888.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.0E-133686IPR001471AP2/ERF domain
PROSITE profilePS5103223.6833794IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-313795IPR001471AP2/ERF domain
SMARTSM003803.5E-3537100IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-213795IPR016177DNA-binding domain
CDDcd000187.42E-323896No hitNo description
PRINTSPR003675.3E-103849IPR001471AP2/ERF domain
PRINTSPR003675.3E-106076IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MIALESTSKN SATISSESQE SKGDKTKPVR DSGKHPVYRG VRKRSWGKWV SEIREPRKKS  60
RIWLGTFPSP EMAARAHDVA ALSIKGTSAI LNFPDLAGSF PRPSSLSPQD IQAAALKAAH  120
MKIIKTTSQS SSSCSSSSSF TFSSSQSSSS LESLVSTGSE ELGEIVQLPS LGSSYDDSTQ  180
FGNEFIFSDS AEFWVYPPQW SEGDYEMIPS FSEGLLSRDW DFQGLYNN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-1934941172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00529DAPTransfer from AT5G25810Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10004870m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006394830.11e-164ethylene-responsive transcription factor TINY
SwissprotQ391271e-104TINY_ARATH; Ethylene-responsive transcription factor TINY
TrEMBLV4ML301e-163V4ML30_EUTSA; Uncharacterized protein
STRINGXP_006394830.11e-164(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.11e-100ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]