PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10004638m | ||||||||
Common Name | EUTSA_v10004638mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | MYB | ||||||||
Protein Properties | Length: 313aa MW: 34513.8 Da PI: 5.1444 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.1 | 1.7e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ + +++G g W+t +++ g++R++k+c++rw +yl Thhalv10004638m 14 KGAWTPEEDQKLIAYLQLHGEGGWRTLPEKAGLKRCGKSCRLRWANYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.7 | 3.7e-15 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg +++eEd+ +++++++ G++ W++Ia + gRt++++k++w++ Thhalv10004638m 67 RGEFSPEEDDTIIKLHALKGNK-WAAIATNLA-GRTDNEIKNYWNTN 111 899*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.6E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.897 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.02E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.83E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.045 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-25 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.0E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.30E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000162 | Biological Process | tryptophan biosynthetic process | ||||
GO:0002213 | Biological Process | defense response to insect | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0009759 | Biological Process | indole glucosinolate biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MVRTPCCKEE GVKKGAWTPE EDQKLIAYLQ LHGEGGWRTL PEKAGLKRCG KSCRLRWANY 60 LRPDIKRGEF SPEEDDTIIK LHALKGNKWA AIATNLAGRT DNEIKNYWNT NLKKRLKQKG 120 LDPVTHKPIN STGLKPENHK PIRSSGSARL LNRVASKYAV DLNRDLLTGI IIGDPTFIAV 180 DSQMIDSPTE NSTSTLLNKM AAKSTSLTSI PINNTSTSSG LSDNCSFSDD FTDFFSNEEI 240 SDMYTNVDNV GLMEELKSIL SYGGAGAGDI KESPEVNNVA DEMEFLDSWN EEGDLDLDKF 300 VSSLESKVGV FV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-25 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 111 | 117 | LKKRLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in tryptophan gene activation and in indole-3-acetic acid (IAA) and indolic glucosinolates (IG) biosynthesis. Acts as a direct transcriptional activator of both Trp synthesis genes and Trp secondary metabolism genes. {ECO:0000269|PubMed:15579661, ECO:0000269|PubMed:23580754, ECO:0000269|PubMed:23943862, ECO:0000269|PubMed:9576939}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10004638m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by herbivory. {ECO:0000269|PubMed:23943862}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006394556.1 | 0.0 | transcription factor MYB34 | ||||
Swissprot | O64399 | 1e-161 | MYB34_ARATH; Transcription factor MYB34 | ||||
TrEMBL | V4KPF2 | 0.0 | V4KPF2_EUTSA; Uncharacterized protein | ||||
STRING | XP_006394556.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9331 | 16 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60890.1 | 1e-150 | myb domain protein 34 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10004638m |
Entrez Gene | 18013170 |