PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10004616m
Common NameEUTSA_v10004616mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family WRKY
Protein Properties Length: 318aa    MW: 36015.6 Da    PI: 6.5134
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10004616mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.41.2e-27120181159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDg++WrKYGqK++ g++fpr+YYrCt++   gC+++k+v+rs+e+p ++ei Y+g H ++
  Thhalv10004616m 120 LDDGFSWRKYGQKDILGAKFPRGYYRCTYRksqGCEATKQVQRSDENPMLFEISYRGIHSCS 181
                      59***************************98889*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.3E-26118182IPR003657WRKY domain
SuperFamilySSF1182903.01E-24119182IPR003657WRKY domain
SMARTSM007745.6E-40120182IPR003657WRKY domain
PROSITE profilePS5081121.643120179IPR003657WRKY domain
PfamPF031061.7E-25121180IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009751Biological Processresponse to salicylic acid
GO:0010193Biological Processresponse to ozone
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MEKKSSNSGE WEKMKKEINE LMTEGRDYAH QLKSQLESSS SPETREHLAK KILESYHKSL  60
TIMNYSGELD QVSPYSYSGG SPKSDDSDQE PRVVKSSKKS MPRWTQKVSI TPGFGIDRTL  120
DDGFSWRKYG QKDILGAKFP RGYYRCTYRK SQGCEATKQV QRSDENPMLF EISYRGIHSC  180
SQAANVGSTI PVQNLGPNQT QEHENLEIVK ESLDIGHHNY NHEAHLHQSF PYPLSSTPNL  240
ESDNAYMLQL RDQNIDLFGS RSYSDLGTNV NYDFMASRDV GSASHSTSNS PSNVRLESPY  300
ESFDPNHPFE GFGRFYS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-191201781474Disease resistance protein RRS1
5w3x_D4e-191201781474Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SUP6}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00525DAPTransfer from AT5G24110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10004616m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:22268143}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300470.0KF430047.1 Brassica rapa WRKY transcription factor 30 (WRKY30) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006394669.10.0probable WRKY transcription factor 30
SwissprotQ9FL621e-167WRK30_ARATH; Probable WRKY transcription factor 30
TrEMBLV4K2090.0V4K209_EUTSA; Uncharacterized protein
STRINGXP_006394669.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125951928
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.11e-160WRKY DNA-binding protein 30
Publications ? help Back to Top
  1. Jiang W,Wu J,Zhang Y,Yin L,Lu J
    Isolation of a WRKY30 gene from Muscadinia rotundifolia (Michx) and validation of its function under biotic and abiotic stresses.
    Protoplasma, 2015. 252(5): p. 1361-74
    [PMID:25643917]
  2. Kanofsky K,Bahlmann AK,Hehl R,Dong DX
    Combinatorial requirement of W- and WT-boxes in microbe-associated molecular pattern-responsive synthetic promoters.
    Plant Cell Rep., 2017. 36(6): p. 971-986
    [PMID:28341984]