PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10004553m
Common NameEUTSA_v10004553mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family GATA
Protein Properties Length: 336aa    MW: 37138.9 Da    PI: 5.3511
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10004553mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.29.3e-18225259135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Thhalv10004553m 225 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 259
                      99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.4E-821313IPR016679Transcription factor, GATA, plant
SMARTSM004018.7E-18219269IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.635219255IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-16221283No hitNo description
Gene3DG3DSA:3.30.50.102.3E-14223257IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.89E-15224271No hitNo description
PROSITE patternPS003440225250IPR000679Zinc finger, GATA-type
PfamPF003201.2E-15225259IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MEEEAHEFFH TADHFAVDDL LVDFSNDDDD ENDVIADSDG INTATAVADS SNSSSFSAGS  60
LPNFHVDVQD GTSFSGDLCV PSDELAELEW LSNFVEDSFS TDDVQKLQLI SGYKTRPDPK  120
SEPGQENPNN NSSPIFTTEV SVPAKARSKR SRAAACNWAS RGLLMEEAVY DDPFTGETIL  180
TSHHHLSPPT SQMSMAHLGK KQAIDGLRRK KDSSLESGGA EERRCLHCAT DKTPQWRTGP  240
MGPKTLCNAC GVRYKSGRLV PEYRPAASPT FVLTKHSNSH RKVMELRRQK EMTKAHHEFI  300
HHHHGTETAM IFDVSSDGDD YLIHHNVGPD FRQLI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00530DAPTransfer from AT5G25830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10004553m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006394835.10.0GATA transcription factor 12
SwissprotP697811e-180GAT12_ARATH; GATA transcription factor 12
TrEMBLV4ML350.0V4ML35_EUTSA; GATA transcription factor
STRINGXP_006394835.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66252644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.11e-153GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]