PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10004526m
Common NameEUTSA_v10004526mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ERF
Protein Properties Length: 342aa    MW: 37317.4 Da    PI: 4.5845
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10004526mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2461.3e-14126173152
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 
                      s+  GVr++k +g+W+AeIr+p     + +r +lg++ t e+Aa a+   +++
  Thhalv10004526m 126 SKPVGVRQRK-WGKWAAEIRHPI----TkTRTWLGTYETLEQAADAYATKKLE 173
                      7899*****9.**********72....36******************877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.56E-18126167No hitNo description
PfamPF008473.1E-9126168IPR001471AP2/ERF domain
SMARTSM003809.3E-14127190IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-14127175IPR016177DNA-binding domain
PROSITE profilePS5103218.624127184IPR001471AP2/ERF domain
PRINTSPR003672.7E-6128139IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-19130180IPR001471AP2/ERF domain
PRINTSPR003672.7E-6150166IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MAEPKKRSSF QTSKPCKKPK KKTFQLNHLP GLSEDLKTMR KIRFVVNDPY ATDYSSSEED  60
ETNLKRKRYV CEVNLPFSQA TTQAESESSY CQESNNGGSK AKTSASSKRV LSSKTPRVVG  120
RSNGVSKPVG VRQRKWGKWA AEIRHPITKT RTWLGTYETL EQAADAYATK KLEFDALAAA  180
TSAPSSDLSD NALSGSHESE SLVSASGSNV EAVSSIDLDK ELVDSTIGPE AGESKKASFD  240
FNFADLQIPD MGCFVDESLI PNACELDFLF TEENNQLLDD YCGIDDMNII GLDCDGPSEL  300
PDYDFSDVEI DLGHIGTTID NFGFVDHITA TTTTPLNIAC P*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10004526m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533190.0AK353319.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-28-P02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006395614.10.0ethylene-responsive transcription factor ERF119
SwissprotQ9LUA21e-169EF119_ARATH; Ethylene-responsive transcription factor ERF119
TrEMBLE4MXS20.0E4MXS2_EUTHA; mRNA, clone: RTFL01-28-P02
TrEMBLV4K5P70.0V4K5P7_EUTSA; Uncharacterized protein
STRINGXP_006395614.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25372671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25890.21e-166ERF family protein