PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10004508m
Common NameEUTSA_v10004508mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family RAV
Protein Properties Length: 346aa    MW: 38865.6 Da    PI: 9.8605
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10004508mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.37.8e-1365113155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s++kGV   + +grW A+I++      ++r++lg+f  ++eAa+a++ a+ +++g
  Thhalv10004508m  65 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDVAAYRFRG 113
                      689***9788.8*********3.....5**********99************998 PP
2B3100.31.1e-31187291199
                      EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                      f+k+ tpsdv+k++rlv+pk+ ae+h      g ++ +++ l +ed +g++W+++++y+++s++yvltkGW++Fvk+++L++gD + F++++ +
  Thhalv10004508m 187 FEKAVTPSDVGKLNRLVIPKHQAEKHfplplaGDVSVKGTLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKRLCAGDLISFRRSNGQ 280
                      89******************************999999***************************************************98779 PP

                      EE..EEEEE-S CS
               B3  89 efelvvkvfrk 99 
                      +++l++++ +k
  Thhalv10004508m 281 DRQLYIGWESK 291
                      99999998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.14E-1765122IPR016177DNA-binding domain
CDDcd000183.76E-2565120No hitNo description
PfamPF008472.7E-865113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-2066121IPR001471AP2/ERF domain
SMARTSM003801.2E-2866127IPR001471AP2/ERF domain
PROSITE profilePS5103220.44266121IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.4E-38179292IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-30184287IPR015300DNA-binding pseudobarrel domain
CDDcd100175.43E-27186279No hitNo description
SMARTSM010191.5E-24187292IPR003340B3 DNA binding domain
PfamPF023628.8E-28187291IPR003340B3 DNA binding domain
PROSITE profilePS5086313.634187292IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MDAVSSVDES STSTDSIHTP AKIPPLTSSR KSSSPASLHR MGSGSSVVLD SDNGVEAESR  60
KLPSSRFKGV VPQPNGRWGA QIYEKHQRVW LGTFNEEDEA ARAYDVAAYR FRGRDAVTNF  120
TAETNGDKDE VDFLNAHSKS EIVDMLRKHT YKEELEQRKR NRDGNGKRKE TAFVTAVTGF  180
KSAESLFEKA VTPSDVGKLN RLVIPKHQAE KHFPLPLAGD VSVKGTLLNF EDVNGKVWRF  240
RYSYWNSSQS YVLTKGWSRF VKEKRLCAGD LISFRRSNGQ DRQLYIGWES KSGSDQDTGR  300
VVMRLFGVDI SKSLNNAVVK EEETEMLSLR CYKKRRVFDA FVTTV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-6618329810124DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00031PBMTransfer from AT3G25730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10004508m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006395630.10.0AP2/ERF and B3 domain-containing transcription factor ARF14
SwissprotQ9LS060.0RAVL4_ARATH; AP2/ERF and B3 domain-containing transcription factor ARF14
TrEMBLV4MMZ00.0V4MMZ0_EUTSA; Uncharacterized protein
STRINGXP_006395630.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84827121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-167related to ABI3/VP1 1