PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10004506m
Common NameEUTSA_v10004506mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family WRKY
Protein Properties Length: 348aa    MW: 38415.1 Da    PI: 10.1975
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10004506mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.8e-31280337359
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ ++++++++tYegeHnh+
  Thhalv10004506m 280 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDETSMLIVTYEGEHNHS 337
                      9*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.0E-15241276IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.3E-33266337IPR003657WRKY domain
PROSITE profilePS5081129.471273339IPR003657WRKY domain
SuperFamilySSF1182901.7E-26276337IPR003657WRKY domain
SMARTSM007745.5E-37278338IPR003657WRKY domain
PfamPF031062.0E-26280336IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MEEVEAANKA AVESCHGVLN LLSQQTNDPK AIMVETREAV SKFKRVASLL TRGSGQRKIR  60
KLNNNFKLFR SPLFPPHIFL ESPICSNNAI SGFIPILAPK PLQMIPPAAA AAASYSEIDP  120
KQKLGHPPMM MLNQKICVDK SYLELKPPAF RAIDPKPYQF LHNQPQAVYS RSNSGLNLKF  180
DGSVGGSCCS PSMSNGSRSF ISSLSMDGSV TDYDRNSFHL IGLPQGSDHI SQQSRRTSCS  240
GSFKCGSRSK CHCSKKRKMR VKRSIKVPAI SNKIADIPPD EYSWRKYGQK PIKGSPHPRG  300
YYKCSSVRGC PARKHVERCV DETSMLIVTY EGEHNHSRIL SSQSAQT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-20266336271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10004506m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4262550.0AF426255.1 Arabidopsis thaliana WRKY transcription factor 74 (WRKY74) mRNA, complete cds.
GenBankAF4423980.0AF442398.1 Arabidopsis thaliana WRKY transcription factor 74 (WRKY74) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006395026.10.0probable WRKY transcription factor 74
RefseqXP_024007112.10.0probable WRKY transcription factor 74
SwissprotQ93WU60.0WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBLV4KQP30.0V4KQP3_EUTSA; Uncharacterized protein
STRINGXP_006395026.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38852359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.10.0WRKY DNA-binding protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]