PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10004052m

Common Name

EUTSA_v10003748mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

FAR1

Protein Properties

Length: 503aa MW: 57747.8 Da PI: 6.8172

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10004052m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	79.5	6.2e-25	72	163	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y+++A+++GFs+rk++s++s++ g +++r+fvC+++g+++++kk+++++ r+r++ r+gC+akl ++ke +w+v+++++ HnHel Thhalv10004052m 72 EYYSAFARKIGFSIRKARSTESQNLG-VYRRDFVCYRSGFNQPRKKANVEHPRERKSVRCGCDAKLYLTKEIvegVTQWYVSQFSNVHNHELL 163 69******************8888.**************************************998767789***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-22	72	163	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.0E-22	295	388	IPR018289	MULE transposase domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 503 aa Download sequence Send to blast
MALKPLNNIW IRRQQCPCGD WKCYIRVEGD ESSFQVTKNE IETTTSSSSS PYDTVFMPYV 60 GQIFRTDDEA FEYYSAFARK IGFSIRKARS TESQNLGVYR RDFVCYRSGF NQPRKKANVE 120 HPRERKSVRC GCDAKLYLTK EIVEGVTQWY VSQFSNVHNH ELLEDDQVRL LPAYRKIQQA 180 DQERILLLSK AGFPVNRIVK LLELEKGVQA GQLPFIEKDV RNFVRACKKT VQENDAFLTE 240 KRETDLLELL ESCKALAERD MGFAYDCTSD ENQKVENLAW AYGDSVQAYS LFGDVVVFDT 300 TYRSITYGLL LGVFFGIDNN GKAVLLGCVL LQDESCRAFT WALQTFVRFM RGRHPQTILT 360 DIDTGLKDAI ARELPNTNHV VFMWHVVSKL ASWFSQSLGS HYDEFRAGFE MLCRAGNVDE 420 FEQQWDLLVT RFGLVPDRHA ALLYSCRATW SPCYIREHFL AHTMTAEFNL SVDSFLKRIV 480 SGPTCIQVLL EERACRSVLL QV*

Sequence ? help Back to Top

Protein Sequence Length: 503 aa Download sequence Send to blast

MALKPLNNIW IRRQQCPCGD WKCYIRVEGD ESSFQVTKNE IETTTSSSSS PYDTVFMPYV  60
GQIFRTDDEA FEYYSAFARK IGFSIRKARS TESQNLGVYR RDFVCYRSGF NQPRKKANVE  120
HPRERKSVRC GCDAKLYLTK EIVEGVTQWY VSQFSNVHNH ELLEDDQVRL LPAYRKIQQA  180
DQERILLLSK AGFPVNRIVK LLELEKGVQA GQLPFIEKDV RNFVRACKKT VQENDAFLTE  240
KRETDLLELL ESCKALAERD MGFAYDCTSD ENQKVENLAW AYGDSVQAYS LFGDVVVFDT  300
TYRSITYGLL LGVFFGIDNN GKAVLLGCVL LQDESCRAFT WALQTFVRFM RGRHPQTILT  360
DIDTGLKDAI ARELPNTNHV VFMWHVVSKL ASWFSQSLGS HYDEFRAGFE MLCRAGNVDE  420
FEQQWDLLVT RFGLVPDRHA ALLYSCRATW SPCYIREHFL AHTMTAEFNL SVDSFLKRIV  480
SGPTCIQVLL EERACRSVLL QV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10004052m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024007204.1	0.0	putative protein FAR1-RELATED SEQUENCE 10 isoform X1
Swissprot	Q9LKR4	0.0	FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	V4K451	0.0	V4K451_EUTSA; Uncharacterized protein
STRING	XP_006395020.1	0.0	(Eutrema salsugineum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1-related sequence 10

Link Out ? help Back to Top
Phytozome	Thhalv10004052m
Entrez Gene	18012964

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]