PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10004031m | ||||||||
Common Name | EUTSA_v10004031mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | bHLH | ||||||||
Protein Properties | Length: 512aa MW: 56283.6 Da PI: 6.4504 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26 | 1.7e-08 | 326 | 373 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Thhalv10004031m 326 SHSLAERVRREKIGERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 373 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.92E-9 | 320 | 377 | No hit | No description |
SuperFamily | SSF47459 | 2.88E-16 | 320 | 386 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.37 | 322 | 372 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.1E-16 | 322 | 388 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-5 | 326 | 373 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.7E-10 | 328 | 378 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 512 aa Download sequence Send to blast |
MENELFMNTE LPPPPEMAVH FEPPSSSSPT LNWALMDPNL SRNSSPPQDC FPWEKSTEQQ 60 QQQSFFDSAL SSLVSSPTPS NSNFSGGGGD GFMIRELIGK LGNIGNSSGE IYGAPMGNNN 120 GQESRSASCY ATPMSSPPPP MMSRTTPLTE FSGDPGFAER AARFSCFGSR SFNGRTNSGL 180 PINNGNIVSS GKLTRVSSTP ALKALVSPEF ASAVSRPMIP AGESNPKLPG EFSRKRKSAS 240 KGKPKENPLS TASPSPTFSK TAERKQDWNG KGIKISEEKG GKRRREEEEE DKDEEEEGNK 300 SNSTKPPEPP KDYIHVRARR GQATDSHSLA ERVRREKIGE RMKLLQDLVP GCNKVTGKAL 360 MLDEIINYVQ SLQRQVEFLS MKLSSVNDTR LEFNMDTLVS KDVMIPSSSN RLHEEGIQCE 420 SSNHHQQLNN YNNNSQLHPN ISSSNMMLQS SMNSLETSTL ARSFTHLPTL TQFTDSISQY 480 HMFSEEDLQS IVGMGVAHNP NHESQNMKIE L* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 232 | 237 | SRKRKS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds DNA to G box 5'-CACGTG-3' and to E-box 5'-CANNTG-3' (By similarity). Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000250|UniProtKB:Q8GY61, ECO:0000269|PubMed:24130508}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00036 | PBM | Transfer from AT5G48560 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10004031m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT002945 | 0.0 | BT002945.1 Arabidopsis thaliana clone RAFL14-96-A17 (R20245) unknown protein (At5g48560) mRNA, complete cds. | |||
GenBank | BT005637 | 0.0 | BT005637.1 Arabidopsis thaliana clone U20245 unknown protein (At5g48560) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006395164.1 | 0.0 | transcription factor bHLH78 | ||||
Swissprot | Q9FJL4 | 0.0 | BH078_ARATH; Transcription factor bHLH78 | ||||
TrEMBL | V4K4H8 | 0.0 | V4K4H8_EUTSA; Uncharacterized protein | ||||
STRING | XP_006395164.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2332 | 27 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48560.1 | 0.0 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10004031m |
Entrez Gene | 18012494 |
Publications ? help Back to Top | |||
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