PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10003485m
Common NameEUTSA_v10003485mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ERF
Protein Properties Length: 198aa    MW: 21658.5 Da    PI: 9.561
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10003485mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.82.3e-1793141355
              AP2   3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      ++GVr+++ +g+ vAeIr  p     + +r++lg+f+taeeAa a+++a+ kl+g
  Thhalv10003485m  93 HRGVRQRH-WGKLVAEIRLpP-----NqTRIWLGTFDTAEEAALAYDRAAFKLRG 141
                      8******9.**********88.....55*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.69E-2991151No hitNo description
SMARTSM003802.3E-3092155IPR001471AP2/ERF domain
SuperFamilySSF541715.62E-1992150IPR016177DNA-binding domain
PROSITE profilePS5103219.91592149IPR001471AP2/ERF domain
PRINTSPR003671.0E-993104IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-2693150IPR001471AP2/ERF domain
PfamPF008476.3E-1193141IPR001471AP2/ERF domain
PRINTSPR003671.0E-9115131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009415Biological Processresponse to water
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MGDFFSNSHG GELMEALQPL YKSASMSASD FTFTSSNAAF LSAPNDIFSP SYYNPQSQRN  60
QCMLNLIDPK LGFLTQLIPV SGPGSAPKPA KLHRGVRQRH WGKLVAEIRL PPNQTRIWLG  120
TFDTAEEAAL AYDRAAFKLR GDSAWPKFPA LQYQTGSSPS DSSKYYGSIQ AVVDVKLDAI  180
LAEPKNQPGI TERTSRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1991157470ATERF1
3gcc_A1e-1991157470ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00182DAPTransfer from AT1G36060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10003485m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024013098.11e-125LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF055
SwissprotQ9SKW54e-83ERF55_ARATH; Ethylene-responsive transcription factor ERF055
TrEMBLV4LX981e-144V4LX98_EUTSA; Uncharacterized protein
STRINGXP_006403045.11e-145(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM151241518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G36060.13e-67ERF family protein
Publications ? help Back to Top
  1. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]