PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10003411m
Common NameEUTSA_v10003411mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family HSF
Protein Properties Length: 136aa    MW: 15866.4 Da    PI: 10.3907
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10003411mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind54.63e-17161055101
                      HHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHH.HTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
     HSF_DNA-bind   5 klyeiledeelkeliswsengnsfvvldeeefak.kvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                       ly++++d++l+++isws++++sfv++++ee+++ k+ ++++   +f  F+  L++YgF++vk   +         eF++ +F +g+ +ll k+
  Thhalv10003411m  16 LLYTVVDDPSLDSIISWSNSNKSFVIWNPEELHQrKIFESHYYGCEFPEFLAVLKTYGFERVKGAGR--------LEFANANFVRGQPKLLGKL 101
                      58**************************9999642899*************************9985........6***************999 PP

                      XXXX CS
     HSF_DNA-bind  98 krkk 101
                      + k+
  Thhalv10003411m 102 QSKA 105
                      9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.6E-1410104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.1E-51336IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.99E-1815102IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.105.7E-191598IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004478.4E-1616103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.1E-56577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MVKYKFPKGI LSIFKLLYTV VDDPSLDSII SWSNSNKSFV IWNPEELHQR KIFESHYYGC  60
EFPEFLAVLK TYGFERVKGA GRLEFANANF VRGQPKLLGK LQSKAWANMR KRFRARMEDE  120
RKTHQPANAL EHLRI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10003411m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002867928.18e-38heat stress transcription factor A-4a
TrEMBLV4NF681e-96V4NF68_EUTSA; Uncharacterized protein
STRINGXP_006403293.12e-97(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50671450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G19630.14e-23HSF family protein