PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10003355m

Common Name

EUTSA_v10003355mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

ERF

Protein Properties

Length: 135aa MW: 14649 Da PI: 7.6661

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10003355m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	67.4	2.7e-21	15	65	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrd ++ g r++lg+f+taeeAa+a+++a+ +++g Thhalv10003355m 15 KYRGVRRRP-WGKYAAEIRDSRKHG--ERVWLGTFDTAEEAARAYDQAAYSMRG 65 8******.******65443..***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	1.05E-23	15	75	IPR016177	DNA-binding domain
PROSITE profile	PS51032	24.026	15	73	IPR001471	AP2/ERF domain
Pfam	PF00847	7.6E-16	15	65	IPR001471	AP2/ERF domain
CDD	cd00018	3.30E-26	15	73	No hit	No description
Gene3D	G3DSA:3.30.730.10	1.3E-32	15	75	IPR001471	AP2/ERF domain
SMART	SM00380	1.6E-35	15	79	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.8E-12	16	27	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.8E-12	39	55	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 135 aa Download sequence Send to blast
MDQGGRGGGG GEQVKYRGVR RRPWGKYAAE IRDSRKHGER VWLGTFDTAE EAARAYDQAA 60 YSMRGQAAIL NFPQEYNMGS AGSSAAMVAG SSSSSASSSR QVFEFEYLDD SVLEELLEEG 120 ENHSKNNSNK GKKK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	6e-55	1	134	1	131	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	3	10	GGRGGGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10003355m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006403243.1	8e-94	ethylene-responsive transcription factor ERF096
Swissprot	Q9LSX0	1e-54	ERF96_ARATH; Ethylene-responsive transcription factor ERF096
TrEMBL	V4NF31	2e-92	V4NF31_EUTSA; Uncharacterized protein
STRING	XP_006403243.1	3e-93	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43410.1	7e-37	ERF family protein

Link Out ? help Back to Top
Phytozome	Thhalv10003355m
Entrez Gene	18020536

Publications ? help Back to Top
Zander M,Thurow C,Gatz C TGA Transcription Factors Activate the Salicylic Acid-Suppressible Branch of the Ethylene-Induced Defense Program by Regulating ORA59 Expression. Plant Physiol., 2014. 165(4): p. 1671-1683 [PMID:24989234]